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Report for CCDS43463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43463.1 Public Homo sapiens 6 PEX39 24 110 108 CCDS HistoryNCBI Gene:441150Re-query CCDS DB by CCDS ID:43463.1Re-query CCDS DB by GeneID:441150See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43463.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408925.4 ENSP00000386146.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408925.4Link to Ensembl Protein Viewer:ENSP00000386146.2Re-query CCDS DB by Nucleotide ID:ENST00000408925Re-query CCDS DB by Protein ID:ENSP00000386146
Original member Current member NCBI NM_001008739.2 NP_001008739.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008739.2Link to Protein Sequence:NP_001008739.1Re-query CCDS DB by Nucleotide ID:NM_001008739Re-query CCDS DB by Protein ID:NP_001008739Link to BLAST:NP_001008739.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008739.1 101 Q5I0X4 101 100% 0 0

Chromosomal Locations for CCDS 43463.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42890483 42890788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGGAGCGTCCCCGCAGTCCCCAATGCTCGGCCCCGGCCTCTGCCTCAGCTTCGGTTACCCTGGCGCAGC
TCCTGCAGCTGGTCCAGCAGGGCCAGGAACTCCCGGGCCTGGAGAAACGCCACATCGCGGCGATCCACGG
CGAACCCACAGCGTCCCGGCTGCCGCGGAGGCCCAAGCCCTGGGAGGCCGCGGCTTTGGCTGAGTCCCTT
CCCCCTCCGACCCTCAGGATAGGAACGGCCCCGGCGGAGCCTGGCTTGGTTGAGGCAGCGACTGCGCCTT
CTTCATGGCATACAGTGGGCCCCTGA

Translation (101 aa):
MERPRSPQCSAPASASASVTLAQLLQLVQQGQELPGLEKRHIAAIHGEPTASRLPRRPKPWEAAALAESL
PPPTLRIGTAPAEPGLVEAATAPSSWHTVGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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