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Report for CCDS16718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16718.1 Public Mus musculus 2 Zc3h8 23 108 98 CCDS HistoryNCBI Gene:57432Re-query CCDS DB by CCDS ID:16718.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028866.8 ENSMUSP00000028866.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028866.8Link to Ensembl Protein Viewer:ENSMUSP00000028866.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028866Re-query CCDS DB by Protein ID:ENSMUSP00000028866
Original member Current member NCBI NM_020594.2 NP_065619.2 Accepted alive Link to Nucleotide Sequence:NM_020594.2Link to Protein Sequence:NP_065619.2Re-query CCDS DB by Nucleotide ID:NM_020594Re-query CCDS DB by Protein ID:NP_065619Link to BLAST:NP_065619.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065619.2 305 Q9JJ48 305 100% 0 0

Chromosomal Locations for CCDS 16718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 128928896 128928928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128929847 128929956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128930792 128930903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128931278 128931400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128933199 128933332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128935312 128935546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128939843 128939936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128943848 128943924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGATTTTGAAAATCTCTTTTCAAAGCCCCCCAATCCGGCCCTCGGCAAAAAACCGGCCGCCGACCCTG
AGGAAAGAATTGATGAAATAGATGGTACTGAAGTTGAAGAAACACAGACAGAGAAAGTCAAATGGAAAGT
AAAACGGGACCGTGAACAAATTCCCAAGAAATTTAAGCACCTTGGAAACGCTGCAACATCACCAAAGAGT
TTGCTACGTAAAAAATCAAGAAGTAAGGACTATGACCCATATAGTGATGGTGAGACATGCAGCCAGGGGT
CAGAAGATAACTTTGACAAAGAGCTTCAACAGTACATACAAGCCAAAGAAATGGCAAACGCAGCTCAACC
CTCATTACTTCCTGAAGAGTCTGTGAAGAAAGCAGGAGCAGAAGGTACCCAGCAGACTGCTAAACAAAAA
AATAAAAAATCTAAAGCTGGTCACAAGAAAGTTAAACAGAAGAAAATGAAGCGAAAGTGGCCTGGCACTG
GAGACAAAGGGTCAAGGGCCTTGCTGAAGAACAGTGGCTCCCGGGAACAGACTGATGAACCTGAAGAGAA
GCAGCCACGTGTGAGGATGAGTCAAGGCTTTATCAACCAGCACACGGTGGAACGCAAAGGGAAGCAAGTT
TGCAAATATTTCCTTGAAAGGAAATGTATTAAGGGAGACCAGTGTAAGTTTGATCATGATGCAGAGATAG
AGAAGAAAAAGGAAATGTGTAAGTATTATGTACAAGGATATTGTACCAAAGGAGAGAACTGCCTGTATTT
ACATAGTGAATACCCTTGCAAGTTTTATCACACAGGAACCAAATGTTATCAGGGCGATCACTGTAATTTT
TCTCACGCCCCGCTGACTGCGGAAACACAAGAACTATTGGCTAAAGTTTTGGATACTGACAAGAAGTCAT
GTAAATAG

Translation (305 aa):
MDFENLFSKPPNPALGKKPAADPEERIDEIDGTEVEETQTEKVKWKVKRDREQIPKKFKHLGNAATSPKS
LLRKKSRSKDYDPYSDGETCSQGSEDNFDKELQQYIQAKEMANAAQPSLLPEESVKKAGAEGTQQTAKQK
NKKSKAGHKKVKQKKMKRKWPGTGDKGSRALLKNSGSREQTDEPEEKQPRVRMSQGFINQHTVERKGKQV
CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLHSEYPCKFYHTGTKCYQGDHCNF
SHAPLTAETQELLAKVLDTDKKSCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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