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Report for CCDS88332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88332.1 Public Mus musculus 12 Crppa 23 108 98 CCDS HistoryNCBI Gene:75847Re-query CCDS DB by CCDS ID:88332.1Re-query CCDS DB by GeneID:75847See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000221177.1 ENSMUSP00000152823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221177.1Link to Ensembl Protein Viewer:ENSMUSP00000152823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221177Re-query CCDS DB by Protein ID:ENSMUSP00000152823
Original member Current member NCBI NM_001289503.1 NP_001276432.1 Accepted alive Link to Nucleotide Sequence:NM_001289503.1Link to Protein Sequence:NP_001276432.1Re-query CCDS DB by Nucleotide ID:NM_001289503Re-query CCDS DB by Protein ID:NP_001276432Link to BLAST:NP_001276432.1

Chromosomal Locations for CCDS 88332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 36390392 36390622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36426289 36426438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36473102 36473206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36476700 36476745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36501978 36502072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36521433 36521522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36521959 36522051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36547829 36547960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36688249 36688353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGAAGCAATGAGAAGTATCATCCAGAGGTATGGGCATAAGCGCATCTCACTAGCTGAGGCTGGAGCCA
CGCGCCACAGATCAATTTTCAATGGACTGAAAGCCCTGGCAGAAGATCAGCCAGACTGTAAACTCACTAA
GCCAGAAGTGGTGATTATCCATGACGCCGTGAGACCTTTTGTTGAGGAAGATATCCTCCTGAGAGTTGTC
TTAGCAGCTAAGGAACATGGGGCAGCAGGAGCAATTCGACCTCTGGTGTCCACTGTCATCAGTCCCTCTG
CTGATGGTCACTTAGACCACTCACTGGACCGTGCCAAGCATAGGGCAAGCGAAATGCCCCAGGCTTTTCT
CTTTGATGTCATCTATGAAGCGTATCAGCAGTGTAGTGATTTTGACTTGGAATTTGGAACAGAGTGCTTG
CAGTTGGCTCTAAAATACTGTCACAGGAAAGCAAAACTTGTAGAAGGGCCCCCTGCCCTCTGGAAGGTGA
CCTACAAACAAGACCTGTGTGCAGCTGAAGCCATGATTAAAGAGAAAATTTCACAAGAGATTTGTGTGGT
CATGAACACAAAAGATGAAGAATCTGTAGGACATCTTCTTGAGGAAGCGCTAAGAAAGGAACTAAATTGT
ATGAAAATCACATCTACAGTTATGGATCACATAGGCGGAGACATTAGGAACTTCATAGAGCAATGTTACA
GTTTCATCTGTGTGAATGTTGTGTCCCCTGATAGTCAAGAAACCAGGAAGTTACTGCGTATCCTCGAAGA
GAGCAGCCTTCCTCTTCTGTATCCTGTAGTTGTTGTTTTGGTACACTGCTTTGACTTCACGTCAGTGCCA
CTCGCTCAGAAGATGGAAAGCCTGGTGTGGATTAGGGGGTTAGCAAAGGAAGTGAAAGAAAGGAATATTC
TCCTAAGTGGACTCCTCCTAAACTACTCACAGGATGAGCAGAAGCTACAAGAGAGTTTAGGACAAAGTGC
AGCCATCATAGCTGCCTTAGTTAAGGAAAGAAATTCTGCACTTGTTGGGCAGCTCCTGGTGGCATGA

Translation (348 aa):
MEAMRSIIQRYGHKRISLAEAGATRHRSIFNGLKALAEDQPDCKLTKPEVVIIHDAVRPFVEEDILLRVV
LAAKEHGAAGAIRPLVSTVISPSADGHLDHSLDRAKHRASEMPQAFLFDVIYEAYQQCSDFDLEFGTECL
QLALKYCHRKAKLVEGPPALWKVTYKQDLCAAEAMIKEKISQEICVVMNTKDEESVGHLLEEALRKELNC
MKITSTVMDHIGGDIRNFIEQCYSFICVNVVSPDSQETRKLLRILEESSLPLLYPVVVVLVHCFDFTSVP
LAQKMESLVWIRGLAKEVKERNILLSGLLLNYSQDEQKLQESLGQSAAIIAALVKERNSALVGQLLVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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