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Report for CCDS39333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39333.1 Public Mus musculus 5 Tfr2 23 108 98 CCDS HistoryNCBI Gene:50765Re-query CCDS DB by CCDS ID:39333.1Re-query CCDS DB by GeneID:50765See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031729.12 ENSMUSP00000031729.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031729.12Link to Ensembl Protein Viewer:ENSMUSP00000031729.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031729Re-query CCDS DB by Protein ID:ENSMUSP00000031729
Original member Current member EBI ENSMUST00000199054.4 ENSMUSP00000142478.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199054.4Link to Ensembl Protein Viewer:ENSMUSP00000142478.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199054Re-query CCDS DB by Protein ID:ENSMUSP00000142478
Original member Current member EBI ENSMUST00000198783.4 ENSMUSP00000142502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198783.4Link to Ensembl Protein Viewer:ENSMUSP00000142502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198783Re-query CCDS DB by Protein ID:ENSMUSP00000142502
Original member Current member EBI ENSMUST00000198866.4 ENSMUSP00000142720.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198866.4Link to Ensembl Protein Viewer:ENSMUSP00000142720.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198866Re-query CCDS DB by Protein ID:ENSMUSP00000142720
Original member Current member EBI ENSMUST00000196471.4 ENSMUSP00000142814.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196471.4Link to Ensembl Protein Viewer:ENSMUSP00000142814.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196471Re-query CCDS DB by Protein ID:ENSMUSP00000142814
Original member NCBI NM_001289507.2 NP_001276436.2 Updated not alive Link to Nucleotide Sequence:NM_001289507.2Link to Protein Sequence:NP_001276436.2Re-query CCDS DB by Nucleotide ID:NM_001289507Re-query CCDS DB by Protein ID:NP_001276436
Current member NCBI NM_001289507.3 NP_001276436.2 Accepted alive Link to Nucleotide Sequence:NM_001289507.3Link to Protein Sequence:NP_001276436.2Re-query CCDS DB by Nucleotide ID:NM_001289507Re-query CCDS DB by Protein ID:NP_001276436Link to BLAST:NP_001276436.2
Original member NCBI NM_001289509.1 NP_001276438.1 Updated not alive Link to Nucleotide Sequence:NM_001289509.1Link to Protein Sequence:NP_001276438.1Re-query CCDS DB by Nucleotide ID:NM_001289509Re-query CCDS DB by Protein ID:NP_001276438
Current member NCBI NM_001289509.2 NP_001276438.1 Accepted alive Link to Nucleotide Sequence:NM_001289509.2Link to Protein Sequence:NP_001276438.1Re-query CCDS DB by Nucleotide ID:NM_001289509Re-query CCDS DB by Protein ID:NP_001276438Link to BLAST:NP_001276438.1
Original member NCBI NM_001289511.1 NP_001276440.1 Updated not alive Link to Nucleotide Sequence:NM_001289511.1Link to Protein Sequence:NP_001276440.1Re-query CCDS DB by Nucleotide ID:NM_001289511Re-query CCDS DB by Protein ID:NP_001276440
Current member NCBI NM_001289511.2 NP_001276440.1 Accepted alive Link to Nucleotide Sequence:NM_001289511.2Link to Protein Sequence:NP_001276440.1Re-query CCDS DB by Nucleotide ID:NM_001289511Re-query CCDS DB by Protein ID:NP_001276440Link to BLAST:NP_001276440.1
Original member NCBI NM_001359206.1 NP_001346135.1 Updated not alive Link to Nucleotide Sequence:NM_001359206.1Link to Protein Sequence:NP_001346135.1Re-query CCDS DB by Nucleotide ID:NM_001359206Re-query CCDS DB by Protein ID:NP_001346135
Current member NCBI NM_001359206.2 NP_001346135.1 Accepted alive Link to Nucleotide Sequence:NM_001359206.2Link to Protein Sequence:NP_001346135.1Re-query CCDS DB by Nucleotide ID:NM_001359206Re-query CCDS DB by Protein ID:NP_001346135Link to BLAST:NP_001346135.1
Original member NCBI NM_015799.4 NP_056614.3 Updated not alive Link to Nucleotide Sequence:NM_015799.4Link to Protein Sequence:NP_056614.3Re-query CCDS DB by Nucleotide ID:NM_015799Re-query CCDS DB by Protein ID:NP_056614
Current member NCBI NM_015799.5 NP_056614.3 Accepted alive Link to Nucleotide Sequence:NM_015799.5Link to Protein Sequence:NP_056614.3Re-query CCDS DB by Nucleotide ID:NM_015799Re-query CCDS DB by Protein ID:NP_056614Link to BLAST:NP_056614.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276436.2 798 Q9JKX3-1 798 100% 0 0
NP_001276438.1 798 Q9JKX3-1 798 100% 0 0
NP_001276440.1 798 Q9JKX3-1 798 100% 0 0
NP_001346135.1 798 Q9JKX3-1 798 100% 0 0
NP_056614.3 798 Q9JKX3-1 798 100% 0 0

Chromosomal Locations for CCDS 39333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137571009 137571041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137571277 137571523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137571614 137571791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137574387 137574527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137574608 137574719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137574814 137574936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137577458 137577574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137577666 137577805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137578879 137579042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137580167 137580286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137582589 137582671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137582758 137582821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137582919 137582986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137583074 137583150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137583231 137583315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137583405 137583632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137583926 137584066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137586829 137587104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGGAGCAACGTTGGGGTCTACTTCGGAGAGTGCAACAGTGGTCCCCAAGACCCTCTCAGACCATCTACA
GACGCGTGGAAGGCCCTCAGCTGGAGCACCTGGAGGAGGAAGACAGGGAGGAAGGGGCGGAGCTTCCTGC
CCAGTTCTGCCCCATGGAACTCAAAGGCCCTGAGCACTTAGGCTCCTGTCCCGGGAGGTCAATTCCCATA
CCCTGGGCTGCAGCAGGTCGAAAGGCTGCCCCCTATCTGGTCCTGATCACCCTGCTAATCTTCACTGGGG
CCTTCCTCCTAGGCTACGTGGCCTTTCGAGGGTCCTGCCAGGCGTGTGGGGACTCCGTGTTGGTGGTCGA
TGAAGATGTCAACCCTGAGGACTCCGGCCGGACCACGTTGTACTGGAGCGACCTCCAGGCCATGTTTCTC
CGGTTCCTTGGGGAGGGGCGCATGGAAGACACCATCAGGCTGACCAGCCTCCGGGAACGCGTGGCTGGCT
CAGCCAGAATGGCCACCCTGGTCCAAGATATCCTCGATAAGCTCTCGCGCCAGAAGCTGGACCACGTGTG
GACTGACACGCACTACGTGGGACTTCAGTTCCCAGATCCGGCTCACGCTAACACCCTGCACTGGGTGGAT
GCAGACGGGAGCGTCCAGGAGCAGCTACCGCTGGAGGATCCGGAAGTCTACTGTCCCTACAGCGCCACCG
GCAACGCCACGGGCAAGCTGGTGTACGCCCACTACGGGCGGTCGGAGGACCTACAGGACCTAAAAGCCAA
GGGCGTGGAGCTGGCCGGCAGCCTCCTGCTAGTGCGAGTTGGAATTACTAGCTTCGCCCAGAAGGTAGCC
GTTGCCCAGGACTTTGGGGCTCAAGGAGTGCTGATATACCCTGACCCATCAGACTTCTCCCAGGATCCCC
ACAAGCCAGGCCTGTCTAGCCACCAGGCTGTGTACGGACATGTGCACCTGGGAACTGGAGACCCTTACAC
ACCTGGCTTCCCGTCCTTCAATCAAACCCAGTTCCCTCCAGTAGAATCATCAGGCCTTCCCAGCATCCCC
GCCCAGCCCATCAGTGCTGACATTGCTGATCAATTGCTCAGGAAACTCACAGGCCCCGTGGCTCCCCAGG
AGTGGAAAGGTCACCTCTCAGGCTCTCCTTATCGGCTGGGACCTGGGCCCGACTTACGCCTTGTGGTCAA
CAACCACAGAGTCTCTACCCCCATCAGTAACATCTTTGCGTGCATCGAGGGCTTTGCAGAGCCAGATCAC
TATGTTGTCATTGGGGCCCAGAGGGATGCATGGGGCCCAGGAGCAGCCAAGTCTGCAGTGGGGACTGCCA
TCCTGCTGGAGCTGGTTCGGACCTTCTCTTCCATGGTCAGCAATGGGTTCAGACCTCGAAGAAGTCTTTT
GTTCATCAGCTGGGACGGAGGTGACTTTGGCAGCGTGGGAGCCACAGAGTGGTTGGAGGGCTACCTCAGC
GTGCTACACCTCAAAGCTGTTGTGTACGTGAGCCTGGACAACTCCGTGTTGGGAGATGGCAAATTCCATG
CTAAGACCAGCCCCCTTCTCGTCAGCCTCATTGAGAATATCTTGAAGCAGGTGGACTCCCCTAACCATAG
TGGACAGACCCTCTATGAACAAGTGGCACTCACCCACCCCAGCTGGGATGCTGAAGTGATTCAGCCCCTG
CCCATGGACAGCAGTGCATATTCCTTCACAGCCTTTGCGGGGGTCCCAGCTGTGGAGTTCTCCTTCATGG
AGGATGATCGGGTGTACCCATTCCTGCACACGAAGGAGGACACATATGAGAATCTGCACAAGATGCTGCG
AGGTCGCCTGCCCGCCGTGGTCCAGGCAGTGGCTCAGCTCGCGGGCCAGCTCCTCATCCGACTGAGCCAC
GATCACCTACTGCCGCTAGACTTCGGCCGCTATGGAGACGTGGTTCTCAGGCACATCGGCAACCTCAATG
AGTTCTCTGGGGACCTCAAGGAGCGCGGGCTGACCCTGCAGTGGGTGTACTCTGCAAGGGGGGACTACAT
CCGTGCGGCGGAAAAGCTGCGGAAGGAGATTTACAGCTCGGAGCGGAACGATGAGCGTCTGATGCGCATG
TACAACGTGCGCATCATGAGGGTGGAGTTCTACTTCCTGTCCCAGTATGTGTCGCCAGCCGACTCCCCAT
TCCGCCACATTTTCCTAGGCCAAGGCGACCACACTTTGGGTGCCCTGGTAGACCACCTGCGGATGCTGCG
CGCCGATGGCTCAGGAGCCGCCTCTTCCCGGTTGACAGCAGGTCTGGGCTTCCAGGAGAGTCGCTTCCGG
CGCCAGCTGGCGCTGCTCACCTGGACACTGCAGGGGGCAGCCAACGCTCTCAGTGGCGACGTTTGGAACA
TTGACAATAACTTTTGA

Translation (798 aa):
MEQRWGLLRRVQQWSPRPSQTIYRRVEGPQLEHLEEEDREEGAELPAQFCPMELKGPEHLGSCPGRSIPI
PWAAAGRKAAPYLVLITLLIFTGAFLLGYVAFRGSCQACGDSVLVVDEDVNPEDSGRTTLYWSDLQAMFL
RFLGEGRMEDTIRLTSLRERVAGSARMATLVQDILDKLSRQKLDHVWTDTHYVGLQFPDPAHANTLHWVD
ADGSVQEQLPLEDPEVYCPYSATGNATGKLVYAHYGRSEDLQDLKAKGVELAGSLLLVRVGITSFAQKVA
VAQDFGAQGVLIYPDPSDFSQDPHKPGLSSHQAVYGHVHLGTGDPYTPGFPSFNQTQFPPVESSGLPSIP
AQPISADIADQLLRKLTGPVAPQEWKGHLSGSPYRLGPGPDLRLVVNNHRVSTPISNIFACIEGFAEPDH
YVVIGAQRDAWGPGAAKSAVGTAILLELVRTFSSMVSNGFRPRRSLLFISWDGGDFGSVGATEWLEGYLS
VLHLKAVVYVSLDNSVLGDGKFHAKTSPLLVSLIENILKQVDSPNHSGQTLYEQVALTHPSWDAEVIQPL
PMDSSAYSFTAFAGVPAVEFSFMEDDRVYPFLHTKEDTYENLHKMLRGRLPAVVQAVAQLAGQLLIRLSH
DHLLPLDFGRYGDVVLRHIGNLNEFSGDLKERGLTLQWVYSARGDYIRAAEKLRKEIYSSERNDERLMRM
YNVRIMRVEFYFLSQYVSPADSPFRHIFLGQGDHTLGALVDHLRMLRADGSGAASSRLTAGLGFQESRFR
RQLALLTWTLQGAANALSGDVWNIDNNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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