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Report for CCDS19334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19334.1 Public Mus musculus 5 Txk 23 108 98 CCDS HistoryNCBI Gene:22165Re-query CCDS DB by CCDS ID:19334.1Re-query CCDS DB by GeneID:22165See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169534.5 ENSMUSP00000129397.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169534.5Link to Ensembl Protein Viewer:ENSMUSP00000129397.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169534Re-query CCDS DB by Protein ID:ENSMUSP00000129397
Original member Current member NCBI NM_013698.3 NP_038726.2 Accepted alive Link to Nucleotide Sequence:NM_013698.3Link to Protein Sequence:NP_038726.2Re-query CCDS DB by Nucleotide ID:NM_013698Re-query CCDS DB by Protein ID:NP_038726Link to BLAST:NP_038726.2

Chromosomal Locations for CCDS 19334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72696571 72696639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72699094 72699251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72700609 72700727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72703268 72703332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72707520 72707736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72710245 72710416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72712782 72712856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72715857 72715984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72716874 72716953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72724411 72724465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72731764 72731829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72734242 72734444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72735114 72735216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72736362 72736435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGATCTCCTTTTCAGATAGCTCCTTCCAGTCTGTTCTCTGCTGCTGCTGTTGCCGCTGCTCAGTACAGA
AGAGACAGGTGAGAACTCAGATAAGCCTGAGCAGAGAGGAAGAACTCTCAGAAAAACATTCCCAGCGTCA
GAGGCCGTGGTTCGCCAAACTGATGGGCAAAACTCAATCCAACAGAGGCGGGGTGCAACCCTCGAAGCGC
AAGCCGCTGCCCCCCCTCCCGCAGGAGCCTCCAGATGAGAGAATCCAGGTCAAGGCTCTTTATGACTTCC
TGCCTCGGGAGCCTGGTAATTTGGCACTGAAGAGAGCGGAGGAATATCTGATATTGGAGAGGTGTGATCC
TCACTGGTGGAAGGCCAGAGACCGCTTCGGGAATGAAGGCTTAATCCCAAGCAACTATGTGACAGAAAAC
AGACTCGCCAACTTAGAAATCTATGAATGGTACCACAAGAACATTACGAGAAACCAGACCGAACGCCTAT
TGAGGCAAGAGGCTAAAGAAGGTGCCTTTATCGTGAGAGATTCGAGACACTTGGGGTCTTACACAATCTC
TGTGTTTACAAGAGCTCGAAGGCATACACAGTCTTCAATAAAACATTATCAGATAAAAAAGAATGACTCC
GGACAGTGGTACATCACCGAAAGACATCTCTTCCCCTCAGTCCCCGAGTTGATCCAGTATCACCAGTACA
ATGCAGCTGGTCTCATATCTCGTCTCCGCTATCCCATTGGGCTCCTGGGCAGCTGTTTACCAGCCACATC
TGGTTTTAGCTATGAAAAGTGGGAGATAGATCCATCAGAGTTGGCTTTTGTCAAGGAGATCGGAAGTGGT
CAGTTTGGGGTTGTCCACTTAGGAGAATGGAGAGCACATATCCCGGTCGCCATCAAGGCCATCAATGAAG
GTTCCATGTCTGAAGAAGACTTCATTGAGGAAGCCAAGGTGATGATGAAACTGTCACATTCGAGGTTAGT
TCAACTTTACGGGGTGTGTATACAGCAGAAGCCCCTGTACATAGTGACGGAGTTCATGGAGAACGGCTGC
CTGCTTGACTATCTCAGGGAGAGGAAAGGCCAGCTTCAGAAGGCGCTGCTCTTGAGCATGTGCCAAGACA
TATGTGAAGGGATGGCGTACCTGGAGAGGAGCTGCTATATTCACAGGGATCTGGCTGCCAGGAACTGTTT
GGTCAGTTCTGCCTGCGTAGTAAAGATCTCAGACTTCGGCATGGCGAGGTATGTTTTGGACGATGAATAT
ATCAGTTCTTCTGGAGCTAAGTTCCCAGTCAAGTGGTGCCCACCTGAAGTCTTTCATTTCAACAAATACA
GTAGCAAGTCTGATGTCTGGTCGTTCGGAGTTTTAATGTGGGAAGTTTTTACAGAAGGAAAAATGCCTTT
TGAAAATAAGTCAAATTTGCAAGTGGTGGAAGCCATTTCTCAAGGTTTCCGGCTGTATCGTCCTCACCTG
GCCCCCATGACCATATACAGAGTGATGTACAGTTGCTGGCATGAGAGCCCTAAAGGCCGTCCGACATTTG
CTGAGCTGCTTCAGGTTCTCACGGAGATCGCAGAAACGTGGTGA

Translation (527 aa):
MISFSDSSFQSVLCCCCCRCSVQKRQVRTQISLSREEELSEKHSQRQRPWFAKLMGKTQSNRGGVQPSKR
KPLPPLPQEPPDERIQVKALYDFLPREPGNLALKRAEEYLILERCDPHWWKARDRFGNEGLIPSNYVTEN
RLANLEIYEWYHKNITRNQTERLLRQEAKEGAFIVRDSRHLGSYTISVFTRARRHTQSSIKHYQIKKNDS
GQWYITERHLFPSVPELIQYHQYNAAGLISRLRYPIGLLGSCLPATSGFSYEKWEIDPSELAFVKEIGSG
QFGVVHLGEWRAHIPVAIKAINEGSMSEEDFIEEAKVMMKLSHSRLVQLYGVCIQQKPLYIVTEFMENGC
LLDYLRERKGQLQKALLLSMCQDICEGMAYLERSCYIHRDLAARNCLVSSACVVKISDFGMARYVLDDEY
ISSSGAKFPVKWCPPEVFHFNKYSSKSDVWSFGVLMWEVFTEGKMPFENKSNLQVVEAISQGFRLYRPHL
APMTIYRVMYSCWHESPKGRPTFAELLQVLTEIAETW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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