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Report for CCDS38547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38547.1 Public Mus musculus 3 Hormad1 23 108 98 CCDS HistoryNCBI Gene:67981Re-query CCDS DB by CCDS ID:38547.1Re-query CCDS DB by GeneID:67981See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090797.10 ENSMUSP00000088303.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090797.10Link to Ensembl Protein Viewer:ENSMUSP00000088303.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090797Re-query CCDS DB by Protein ID:ENSMUSP00000088303
Original member Current member EBI ENSMUST00000107154.3 ENSMUSP00000102772.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107154.3Link to Ensembl Protein Viewer:ENSMUSP00000102772.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107154Re-query CCDS DB by Protein ID:ENSMUSP00000102772
Original member Current member EBI ENSMUST00000171191.5 ENSMUSP00000127180.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171191.5Link to Ensembl Protein Viewer:ENSMUSP00000127180.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171191Re-query CCDS DB by Protein ID:ENSMUSP00000127180
Original member Current member NCBI NM_001289534.1 NP_001276463.1 Accepted alive Link to Nucleotide Sequence:NM_001289534.1Link to Protein Sequence:NP_001276463.1Re-query CCDS DB by Nucleotide ID:NM_001289534Re-query CCDS DB by Protein ID:NP_001276463Link to BLAST:NP_001276463.1
Original member Current member NCBI NM_001289537.1 NP_001276466.1 Accepted alive Link to Nucleotide Sequence:NM_001289537.1Link to Protein Sequence:NP_001276466.1Re-query CCDS DB by Nucleotide ID:NM_001289537Re-query CCDS DB by Protein ID:NP_001276466Link to BLAST:NP_001276466.1
Original member Current member NCBI NM_026489.3 NP_080765.1 Accepted alive Link to Nucleotide Sequence:NM_026489.3Link to Protein Sequence:NP_080765.1Re-query CCDS DB by Nucleotide ID:NM_026489Re-query CCDS DB by Protein ID:NP_080765Link to BLAST:NP_080765.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276463.1 374 Q9D5T7-2 374 100% 0 0
NP_001276466.1 374 Q9D5T7-2 374 100% 0 0
NP_080765.1 374 Q9D5T7-2 374 100% 0 0

Chromosomal Locations for CCDS 38547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95561245 95561280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95562480 95562624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95566621 95566684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95567684 95567720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95570666 95570686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95570928 95570954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95575535 95575602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95576277 95576428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95578053 95578300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95580005 95580071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95580158 95580234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95581507 95581590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95585140 95585214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95585535 95585558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGCCACTATGCAGTTGCAGAGGACAGCTTCCCTGAGTGCATTGGTATTTCCCAATAAGATATCAACTG
AGCATCAATCTTTGATGTTTGTGAAGAGGCTCCTAGCTGTTTCAGTATCTTGCATCACCTATTTGAGAGG
AATATTTCCAGAACGTGCTTATGGGACAAGATATCTGGATGATCTCTGTGTCAAAATTCTGAAAGAAGAT
AAAAATTGTCCAGGTTCTTCACAGCTAGTGAAGTGGATGCTTGGATGCTATGATGCTTTACAGAAGAAAT
ATCTAAGGATGATCATTCTAGCTGTATACACCAATCCAGGAGATCCTCAGACAATTTCAGAATGTTACCA
GTTTAAATTCAAGTACACCAAAAATGGACCAATCATGGACTTTATAAGCAAAAATCAAAACAATAAATCT
AGTACAACATCTGCTGACACCAAGAAAGCAAGTATTCTCCTCATTCGGAAGATTTATGTCTTAATGCAAA
ATCTAGGACCATTACCTAATGATGTTTGTCTGACCATGAAACTTTTTTACTATGATGAAGTTACACCCCC
AGATTACCAACCACCAGGTTTTAAGGATGGTGACTGTGAAGGAGTAATATTTGATGGGGACCCTACATAC
TTAAATGTGGGAGAAGTCCCAACACCTTTTCACACCTTCAGATTAAAAGTGACCACTGAGAAGGAACGAA
TGGAAAATATTGATTCAACCATACTAAAACCAAAAGAATCAAAAACACAATTTGAAAAAATTCTAATGGA
CAAAGATGATGTGGAAGATGAAAATCATAATAATTTTGACATTAAAACTAAAATGAACGAACAGAATGAA
AACTCTGGAGCTTCTGAAATCAAAGAACCAAATTTAGATTGTAAGGAAGAAGAAACTATGCAATTCAAAA
AGAGCCAAAGTCCTTCAATTTCTCATTGTCAGGTTGAACAGTTAGTCAGTAAAACATCTGAACTTGATGT
GTCTGAAAGCAAAACAAGAAGCGGAAAAATCTTTCAGAGTAAAATGGTAAATGGAAATAATCAACAAGGA
CAAACTTCTAAAGAAAATCGGAAGAGAAGTCTTCGTCAATTTAGGAAAACAATAAATGCACCTGAGTGTA
GGTGA

Translation (374 aa):
MATMQLQRTASLSALVFPNKISTEHQSLMFVKRLLAVSVSCITYLRGIFPERAYGTRYLDDLCVKILKED
KNCPGSSQLVKWMLGCYDALQKKYLRMIILAVYTNPGDPQTISECYQFKFKYTKNGPIMDFISKNQNNKS
STTSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFDGDPTY
LNVGEVPTPFHTFRLKVTTEKERMENIDSTILKPKESKTQFEKILMDKDDVEDENHNNFDIKTKMNEQNE
NSGASEIKEPNLDCKEEETMQFKKSQSPSISHCQVEQLVSKTSELDVSESKTRSGKIFQSKMVNGNNQQG
QTSKENRKRSLRQFRKTINAPECR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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