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Report for CCDS51589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51589.1 Public Mus musculus 5 Rpap2 23 108 98 CCDS HistoryNCBI Gene:231571Re-query CCDS DB by CCDS ID:51589.1Re-query CCDS DB by GeneID:231571See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112650.7 ENSMUSP00000108269.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112650.7Link to Ensembl Protein Viewer:ENSMUSP00000108269.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112650Re-query CCDS DB by Protein ID:ENSMUSP00000108269
Original member Current member NCBI NM_001163462.2 NP_001156934.1 Accepted alive Link to Nucleotide Sequence:NM_001163462.2Link to Protein Sequence:NP_001156934.1Re-query CCDS DB by Nucleotide ID:NM_001163462Re-query CCDS DB by Protein ID:NP_001156934Link to BLAST:NP_001156934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156934.1 489 Q8VC34-4 489 100% 0 0

Chromosomal Locations for CCDS 51589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107603529 107603624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107603821 107603886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107606905 107606993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107618141 107618176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107619822 107620755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107623702 107623796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107625888 107625968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107633063 107633131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107641783 107641786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGTTCATCACACCAGCTCACTACAGCGACGTTGTGGATGAGCGGTCCATCATCAAACTCTGTGGCTATC
CTTTGTGTCAGAAGAAGCTAGGGGTTATCCCGAAACAGAAATATCGAATTTCTACTAAAACCAATAAAGT
CTATGATATTACTGAAAGGAAGTCTTTCTGCAGCAATTTTTGTTACAGAGCATCTAAATTTTTTGAAACA
CAGATTCCCAAAACTCCAGTATGGGTTCGAGAGGAAGAGAGGCCTCCTGACTTTCAGCTGCTGAAGAAAG
GACAAAGCGGCAGTTCTGGAGAAGTAGTACAGTTCTTCCGAGATGCCGTGACAGCAGCAGATGTTGACGG
TTCCGGCGCCTTGGAGGCGCAGTGTGACCCTGCTTCTTCCAGCTCTTGGAGTGAGCGAGCCAGTGATGAG
GAGGAGCAAGGCTTTGTTTCTTCTCTTCTACCAGGAAACAGACCAAAGGCAGTGGATACAAGACCGCAGC
CGCACACAAAAAGCAGCATCATGAGAAAGAAGGCTGCTCAGAACGTGGACTCCAAGGAGGGAGAGCAGAC
CGTGTCAGAGGTTACCGAGCAGCTGGATAATTGCAGATTAGATAGTCAGGAGAAAGTGGCCACTTGTAAA
CGTCCTTTAAAGAAAGAAAGTACTCAGATTTCTTCACCTGGCCCTTTGTGTGACAGATTTAACACTTCAG
CCATTTCTGAACATAAACACGGTGTATCACAAGTTACGCTTGTAGGCATAAGCAAGAAGAGTGCTGAGCA
TTTCAGGAGCAAATTTGCCAAGTCAAATCCAGGTTCTGGGTCAGCCTCTGGTTTGGTACACGTGCGTCCT
GAGGTTGCGAAGGCAAATTTACTCCGAGTTCTGTCGGACACTCTGACTGAATGGAAGACAGAAGAAACAC
TGAAGTTTTTATATGGCCAGAACCACGATTCTGTGTGTCTGAAACCCTCTTCAGCCTCTGAGCCTGATGA
AGAACTTGATGAAGATGACATAAGTTGTGACCCAGGTAGTTGTGGTCCTGCCCTGAGTCAAGCTCAGAAC
ACCCTAGATGCAACACTGCCCTTTAGAGGCTCAGACACAGCCATTAAGCCACTGCCAAGTTATGAGAGCT
TGAAAAAGGAAACGGAGATGCTGAACCTGAGGGTCAGGGAGTTCTACAGAGGGCGCTGTGTTTTAAATGA
AGACACTACCAAGTCTCAGGACTCTAAAGAGAGTGTGCTTCAGCGTGACCCCAGCTTCCCGCTGATAGAT
TCAAGTTCCCAGAACCAGATTAGAAGACGGATTGTTCTTGAAAAACTGAGCAAAGTATTGCCTGGACTTT
TGGGTCCTCTTCAGATTACAATGGGAGATATTTACACTGAACTTAAAAACCTCATTCAGACTTTCAGATT
ATCAAATAGAAACATTATACACAAACCTGTGGAGTGGACTTTAATTGCTGTGGTCTTGCTGTTACTATAA

Translation (489 aa):
MFITPAHYSDVVDERSIIKLCGYPLCQKKLGVIPKQKYRISTKTNKVYDITERKSFCSNFCYRASKFFET
QIPKTPVWVREEERPPDFQLLKKGQSGSSGEVVQFFRDAVTAADVDGSGALEAQCDPASSSSWSERASDE
EEQGFVSSLLPGNRPKAVDTRPQPHTKSSIMRKKAAQNVDSKEGEQTVSEVTEQLDNCRLDSQEKVATCK
RPLKKESTQISSPGPLCDRFNTSAISEHKHGVSQVTLVGISKKSAEHFRSKFAKSNPGSGSASGLVHVRP
EVAKANLLRVLSDTLTEWKTEETLKFLYGQNHDSVCLKPSSASEPDEELDEDDISCDPGSCGPALSQAQN
TLDATLPFRGSDTAIKPLPSYESLKKETEMLNLRVREFYRGRCVLNEDTTKSQDSKESVLQRDPSFPLID
SSSQNQIRRRIVLEKLSKVLPGLLGPLQITMGDIYTELKNLIQTFRLSNRNIIHKPVEWTLIAVVLLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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