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Report for CCDS20601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20601.1 Public Mus musculus 6 Klra3 23 108 98 CCDS HistoryNCBI Gene:16634Re-query CCDS DB by CCDS ID:20601.1Re-query CCDS DB by GeneID:16634See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088017.4 ENSMUSP00000085333.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088017.4Link to Ensembl Protein Viewer:ENSMUSP00000085333.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088017Re-query CCDS DB by Protein ID:ENSMUSP00000085333
Original member Current member EBI ENSMUST00000111998.8 ENSMUSP00000107629.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111998.8Link to Ensembl Protein Viewer:ENSMUSP00000107629.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111998Re-query CCDS DB by Protein ID:ENSMUSP00000107629
Original member Current member NCBI NM_001289604.1 NP_001276533.1 Accepted alive Link to Nucleotide Sequence:NM_001289604.1Link to Protein Sequence:NP_001276533.1Re-query CCDS DB by Nucleotide ID:NM_001289604Re-query CCDS DB by Protein ID:NP_001276533Link to BLAST:NP_001276533.1
Original member Current member NCBI NM_001289605.1 NP_001276534.1 Accepted alive Link to Nucleotide Sequence:NM_001289605.1Link to Protein Sequence:NP_001276534.1Re-query CCDS DB by Nucleotide ID:NM_001289605Re-query CCDS DB by Protein ID:NP_001276534Link to BLAST:NP_001276534.1
Original member Current member NCBI NM_010648.3 NP_034778.2 Accepted alive Link to Nucleotide Sequence:NM_010648.3Link to Protein Sequence:NP_034778.2Re-query CCDS DB by Nucleotide ID:NM_010648Re-query CCDS DB by Protein ID:NP_034778Link to BLAST:NP_034778.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276533.1 266 Q64329 266 100% 0 0
NP_001276534.1 266 Q64329 266 100% 0 0
NP_034778.2 266 Q64329 266 100% 0 0

Chromosomal Locations for CCDS 20601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 130323604 130323739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130327063 130327166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130330122 130330261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130333135 130333353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130334215 130334304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130335688 130335799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGAGTGAGCCAGAGGTCACTTACTCAACTGTGAGACTTCATAAGTCTTCAGGGTTGCAGAAACTAGTAA
GGCATGAGGAGACTCAAGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAGCACCCTGGCAACTCATTGT
GAAAGCTCTTGGAATCCTCTGTTTCCTTCTTCTTGTAACAGTTGCAGTGTTGGCAGTAAAGATTTTTCAG
TATAATCAACACAAACAAGAAATCAATGAAACTCTAAACCACCACCATAACTGCAGCAACATGCAAAGGG
CTTTCAACTTAAAGGAAGAAATGTTGACAAATAAGTCTATAGATTGTAGGCCAAGCAATGAAACTCTGGA
ATATATCAAAAGAGAACAGGACAGATGGGACAGTAAAACAAAGACTGTTTTAGATTCCTCACGGGACACA
GGCAGAGGTGTTAAATACTGGTTCTGCTATAGTACTAAATGTTATTATTTCATCATGAACAAAACGACAT
GGAGTGGATGTAAAGCGAACTGCCAGCATTATAGCGTTCCCATTCTGAAGATAGAAGATGAAGATGAACT
GAAATTCCTTCAACGCCATGTTATTCCAGAGAATTACTGGATTGGATTGTCTTATGATAAGAAAAAAAAG
GAATGGGCATGGATTGACAATGGCCCATCTAAACTTGACATGAAAATAAGGAAAATGAACTTTAAGTCTA
GAGGATGTGTATTTTTATCTAAAGCAAGAATAGAAGATATTGACTGTAATATTCCCTACTACTGTATTTG
TGGGAAGAAACTGGATAAATTCCCTGATTAA

Translation (266 aa):
MSEPEVTYSTVRLHKSSGLQKLVRHEETQGPREVGNRKCSAPWQLIVKALGILCFLLLVTVAVLAVKIFQ
YNQHKQEINETLNHHHNCSNMQRAFNLKEEMLTNKSIDCRPSNETLEYIKREQDRWDSKTKTVLDSSRDT
GRGVKYWFCYSTKCYYFIMNKTTWSGCKANCQHYSVPILKIEDEDELKFLQRHVIPENYWIGLSYDKKKK
EWAWIDNGPSKLDMKIRKMNFKSRGCVFLSKARIEDIDCNIPYYCICGKKLDKFPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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