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Report for CCDS88606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88606.1 Public Mus musculus 14 Arhgef3 23 108 98 CCDS HistoryNCBI Gene:71704Re-query CCDS DB by CCDS ID:88606.1Re-query CCDS DB by GeneID:71704See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224981.1 ENSMUSP00000153124.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224981.1Link to Ensembl Protein Viewer:ENSMUSP00000153124.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224981Re-query CCDS DB by Protein ID:ENSMUSP00000153124
Original member Current member NCBI NM_001289687.1 NP_001276616.1 Accepted alive Link to Nucleotide Sequence:NM_001289687.1Link to Protein Sequence:NP_001276616.1Re-query CCDS DB by Nucleotide ID:NM_001289687Re-query CCDS DB by Protein ID:NP_001276616Link to BLAST:NP_001276616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276616.1 524 Q91X46-1 524 100% 0 0

Chromosomal Locations for CCDS 88606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 27336177 27336269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27362790 27362897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27379591 27379761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27384154 27384216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27385845 27385941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27386093 27386169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27393933 27394190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27397563 27397733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27400265 27400451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27401630 27401979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGGTGGCCAAGGATTACCCCTTCTACCTCACTGTCAAGAGGGCAAACTGCAGCTTGGAGGCGCCCCTGG
GCAGCGGGGTGGCCAAGGACGAGGAACCTAGTAACAAAAGGGTCAAACCCCTTTCCAGAGTCACATCGCT
AGCAAACCTCATTCCACCTGTGAAGACCACACCATTAAAGCGCTTCAGCCAGACCTTGCAGCGGTCCATC
AGCTTCCGCAGCGAGAGCCGCCCCGACATCCTTGCCCCCCGAGCTTGGTCCAGAAATGCCACCTCCTCAA
GCACAAAGCGGAGAGACAGCAAACTGTGGAGTGAGACCTTCGATGTGTGTGTCAATCAGGTGCTCACGGC
CAAGGAGATCAAGAGACAGGAGGCGATCTTTGAACTTTCTCAAGGTGAAGAAGACTTGATAGAGGACTTG
AAATTAGCAAAAAAGGCCTACCACGACCCCATGCTGAAACTCTCCATAATGACGGAACAGGAACTGAATC
AGATTTTTGGGACCCTGGACTCTCTAATTCCTCTCCATGAAGAGCTCCTCAGTCAGCTTCGAGATGTTCG
GAAACCCGATGGCTCGACTGAGCACGTTGGTCCCATCCTCGTGGGCTGGCTGCCCTGTCTCAGCTCCTAC
GACAGCTACTGCAGCAATCAAGTCGCCGCCAAAGCCCTGCTGGACCACAAAAAGCAGGACCACAGAGTGC
AGGACTTCCTCCAGCGCTGTTTAGAATCACCCTTCAGTCGCAAACTCGATCTCTGGAATTTCCTTGATAT
TCCCCGGAGCCGGCTAGTGAAGTATCCTCTGCTCCTTCGAGAAATCCTGAGGCATACACCAAATGATAAC
CCAGACCAGCAGCACCTGGAAGAAGCTATAAACATCATCCAGGGAATTGTGGCAGAAATCAACACCAAGA
CTGGGGAATCGGAATGCCGCTATTACAAAGAGCGGCTCCTTTACCTGGAAGAAGGCCAGAAAGATTCTCT
GATTGACAGCTCAAGGGTCCTGTGTTGTCATGGAGAGCTGAAAAATAACCGGGGTGTGAAACTCCATGTT
TTCCTGTTCCAAGAAGTGCTGGTGATCACCCGAGCTGTCACTCACAACGAGCAGCTCTGCTATCAGTTGT
ACCGACAGCCCATCCCTGTGAAGGACCTCACGCTGGAAGACCTGCAGGATGGAGAAGTGCGGCTGGGTGG
CTCCCTGCGCGGGGCCTTCAGCAACAACGAGAGAGTTAAAAACTTCTTCAGAGTCAGTTTCAAAAATGGA
TCCCAAAGTCAGACCCACTCACTACAAGCCAACGACACCTTCAACAAACAGCAGTGGCTCAACTGTATCC
GTCAGGCAAAAGAAACTGTTCTGTCTGCTGCCGGCCAGGCTGGCTTGCTTGACTCTGAGGGACTGGTCCA
GGGTCCCGGCACTGAGAACAGGGAGCCACAGGGAGAAACAAAACTTGAGCAGATGGACCAATCGGACAGC
GAGTCGGACTGCAGTATGGACACCAGTGAGGTCAGCCTTGAGTGTGAGCGGATGGAACAGACAGACGCTT
CCTGTGCAAACAGCAGGCCCGAGGAGAGTGTCTGA

Translation (524 aa):
MVAKDYPFYLTVKRANCSLEAPLGSGVAKDEEPSNKRVKPLSRVTSLANLIPPVKTTPLKRFSQTLQRSI
SFRSESRPDILAPRAWSRNATSSSTKRRDSKLWSETFDVCVNQVLTAKEIKRQEAIFELSQGEEDLIEDL
KLAKKAYHDPMLKLSIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLPCLSSY
DSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDN
PDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCHGELKNNRGVKLHV
FLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNG
SQSQTHSLQANDTFNKQQWLNCIRQAKETVLSAAGQAGLLDSEGLVQGPGTENREPQGETKLEQMDQSDS
ESDCSMDTSEVSLECERMEQTDASCANSRPEESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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