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Report for CCDS8549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8549.1 Public Homo sapiens 12 GAPDH 24 110 108 CCDS HistoryNCBI Gene:2597Re-query CCDS DB by CCDS ID:8549.1Re-query CCDS DB by GeneID:2597See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8549.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229239.10 ENSP00000229239.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229239.10Link to Ensembl Protein Viewer:ENSP00000229239.5Re-query CCDS DB by Nucleotide ID:ENST00000229239Re-query CCDS DB by Protein ID:ENSP00000229239
Original member Current member EBI ENST00000396859.5 ENSP00000380068.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396859.5Link to Ensembl Protein Viewer:ENSP00000380068.1Re-query CCDS DB by Nucleotide ID:ENST00000396859Re-query CCDS DB by Protein ID:ENSP00000380068
Original member Current member EBI ENST00000396861.5 ENSP00000380070.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396861.5Link to Ensembl Protein Viewer:ENSP00000380070.1Re-query CCDS DB by Nucleotide ID:ENST00000396861Re-query CCDS DB by Protein ID:ENSP00000380070
Original member Current member NCBI NM_001289745.3 NP_001276674.1 Accepted alive Link to Nucleotide Sequence:NM_001289745.3Link to Protein Sequence:NP_001276674.1Re-query CCDS DB by Nucleotide ID:NM_001289745Re-query CCDS DB by Protein ID:NP_001276674Link to BLAST:NP_001276674.1
Original member Current member NCBI NM_001289746.2 NP_001276675.1 Accepted alive Link to Nucleotide Sequence:NM_001289746.2Link to Protein Sequence:NP_001276675.1Re-query CCDS DB by Nucleotide ID:NM_001289746Re-query CCDS DB by Protein ID:NP_001276675Link to BLAST:NP_001276675.1
Original member Current member NCBI NM_002046.7 NP_002037.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002046.7Link to Protein Sequence:NP_002037.2Re-query CCDS DB by Nucleotide ID:NM_002046Re-query CCDS DB by Protein ID:NP_002037Link to BLAST:NP_002037.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276674.1 335 P04406-1 335 100% 0 0
NP_001276675.1 335 P04406-1 335 100% 0 0
NP_002037.2 335 P04406-1 335 100% 0 0

Chromosomal Locations for CCDS 8549.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6534833 6534861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6536494 6536593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6536684 6536790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6536920 6537010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6537101 6537216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6537309 6537390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6537584 6537996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6538101 6538170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTTA
ACTCTGGTAAAGTGGATATTGTTGCCATCAATGACCCCTTCATTGACCTCAACTACATGGTTTACATGTT
CCAATATGATTCCACCCATGGCAAATTCCATGGCACCGTCAAGGCTGAGAACGGGAAGCTTGTCATCAAT
GGAAATCCCATCACCATCTTCCAGGAGCGAGATCCCTCCAAAATCAAGTGGGGCGATGCTGGCGCTGAGT
ACGTCGTGGAGTCCACTGGCGTCTTCACCACCATGGAGAAGGCTGGGGCTCATTTGCAGGGGGGAGCCAA
AAGGGTCATCATCTCTGCCCCCTCTGCTGATGCCCCCATGTTCGTCATGGGTGTGAACCATGAGAAGTAT
GACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCACCCCTGGCCAAGGTCA
TCCATGACAACTTTGGTATCGTGGAAGGACTCATGACCACAGTCCATGCCATCACTGCCACCCAGAAGAC
TGTGGATGGCCCCTCCGGGAAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACATCATCCCTGCCTCT
ACTGGCGCTGCCAAGGCTGTGGGCAAGGTCATCCCTGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCC
GTGTCCCCACTGCCAACGTGTCAGTGGTGGACCTGACCTGCCGTCTAGAAAAACCTGCCAAATATGATGA
CATCAAGAAGGTGGTGAAGCAGGCGTCGGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGCACCAG
GTGGTCTCCTCTGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTGGGGCTGGCATTGCCCTCA
ACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAACGAATTTGGCTACAGCAACAGGGTGGTGGACCT
CATGGCCCACATGGCCTCCAAGGAGTAA

Translation (335 aa):
MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVIN
GNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY
DNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAS
TGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQ
VVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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