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Report for CCDS22012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22012.1 Public Mus musculus 7 Cend1 23 108 98 CCDS HistoryNCBI Gene:57754Re-query CCDS DB by CCDS ID:22012.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084436.9 ENSMUSP00000081476.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084436.9Link to Ensembl Protein Viewer:ENSMUSP00000081476.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084436Re-query CCDS DB by Protein ID:ENSMUSP00000081476
Original member Current member EBI ENSMUST00000124444.1 ENSMUSP00000118591.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124444.1Link to Ensembl Protein Viewer:ENSMUSP00000118591.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124444Re-query CCDS DB by Protein ID:ENSMUSP00000118591
Original member Current member EBI ENSMUST00000137488.1 ENSMUSP00000123334.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137488.1Link to Ensembl Protein Viewer:ENSMUSP00000123334.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137488Re-query CCDS DB by Protein ID:ENSMUSP00000123334
Original member Current member EBI ENSMUST00000164387.1 ENSMUSP00000131085.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164387.1Link to Ensembl Protein Viewer:ENSMUSP00000131085.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164387Re-query CCDS DB by Protein ID:ENSMUSP00000131085
Original member Current member NCBI NM_001360485.1 NP_001347414.1 Accepted alive Link to Nucleotide Sequence:NM_001360485.1Link to Protein Sequence:NP_001347414.1Re-query CCDS DB by Nucleotide ID:NM_001360485Re-query CCDS DB by Protein ID:NP_001347414Link to BLAST:NP_001347414.1
Original member Current member NCBI NM_021316.5 NP_067291.1 Accepted alive Link to Nucleotide Sequence:NM_021316.5Link to Protein Sequence:NP_067291.1Re-query CCDS DB by Nucleotide ID:NM_021316Re-query CCDS DB by Protein ID:NP_067291Link to BLAST:NP_067291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347414.1 149 Q9JKC6 149 100% 0 0
NP_067291.1 149 Q9JKC6 149 100% 0 0

Chromosomal Locations for CCDS 22012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141427456 141427905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGAATCCCGAGGAAAGTCAGCCAGCAGCCCCAAGCCAGATACCAAGGTGCCTCAGGCCACAGCTGAGG
CCAAGGCCACTCCAGCTGCGGATGGGAAAGCTCCCTTGACCAAGCCTGTGAAGAAGGACACCCAAGCAGA
GAAGCAGGAGCAAGCAGCAGCCCCTGGGCCAGCCGCTACGAAGAAGACACCAGCCAAGGCAGATCCTGTA
CTTCTCAACAACCACAGCAACCTGAAGCCAGCTCCCACAGTGCCGGCAGCCCCCAGCAGTCCTGATGCAA
CCTCAGAGCCCAAGGGTCCTGGGGATGGGGCAGAGGAGGACGAGTCCAACACTGGAGGCCGAGGTCCCTG
GCCTTGTGAGAACTTGACCCCTTTGCTGGTAGCTGGGGGTGTGGCCGTGGCCACCATAGCTCTAATTCTT
GGTGTGGCCTTTCTAGCCCGGAAAAAATGA

Translation (149 aa):
MESRGKSASSPKPDTKVPQATAEAKATPAADGKAPLTKPVKKDTQAEKQEQAAAPGPAATKKTPAKADPV
LLNNHSNLKPAPTVPAAPSSPDATSEPKGPGDGAEEDESNTGGRGPWPCENLTPLLVAGGVAVATIALIL
GVAFLARKK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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