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Report for CCDS20111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20111.1 Public Mus musculus 6 Gimap6 23 108 98 CCDS HistoryNCBI Gene:231931Re-query CCDS DB by CCDS ID:20111.1Re-query CCDS DB by GeneID:231931See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053661.6 ENSMUSP00000059371.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053661.6Link to Ensembl Protein Viewer:ENSMUSP00000059371.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053661Re-query CCDS DB by Protein ID:ENSMUSP00000059371
Original member Current member NCBI NM_153175.3 NP_694815.1 Accepted alive Link to Nucleotide Sequence:NM_153175.3Link to Protein Sequence:NP_694815.1Re-query CCDS DB by Nucleotide ID:NM_153175Re-query CCDS DB by Protein ID:NP_694815Link to BLAST:NP_694815.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694815.1 305 Q8K349 305 100% 0 0

Chromosomal Locations for CCDS 20111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48702183 48702823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48704422 48704506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48707959 48708150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGATTGGCTTTACAGAAAAACACTCGGGTCCATCGGCTCATGTTCTATAGAAACTTTTCCCTGGCCAT
TCTATTCATTCTTTCAGAGAATCTACATTTCGACCCCACCAGGAAAGCCAGAAAATTCACCAGAGACCAG
TGCTACTGAAGTCGGGGAACAGAGACCTTCTTGCCTGTCAGCCAGCCCAGTGGTGGAAGAGGAAGAGTGT
GAGCACAGACCTGAGAAGAATCCCACAAGGCAGTGGCCCCTGGACTCTGGACAAGGATTGACAAAAGGTC
TGAAGGAGAAAAAACTCACCCCAAAGAGACTGCAGCTCCTTCTGGTGGGGAAAACAGGAAGCGGGAAAAG
TGCAACAGGGAACAGCATCCTTGGCAGGCAAGCCTTTGAATCCAAAATCAGCGCTCGACCAGTGACCACG
ACATTCCAGAAAGGGACTAGAGAGTTTGAGGGGAAAGAACTTGAGGTGATCGACACCCCAGATATTTTTT
CACCTCAGAACCAGCCTGAGGCAACAGCTAAGAAGATCTGTGACCTCTTGGCCTCACCAGGGCCCCATGC
AGTGCTGCTGGTGATACAGGTAGGCCGGTACACTGCCGAGGACCAGGCGGTAGCCAGGTGCCTCCAGGAG
ATCTTTGGAAACACGATCCTGGCTTACACTATTCTGGTGTTCACCCGGAAGGAAGACCTGGCTGAGGGCT
CCTTAGAAGAATATATTCAAGAGAACAACAATAAGAGCCTGGATGTTCTGGATGTTGCATGTGAGAGGCG
CCACTGTGGCTTCAACAACAAGGCACAAGGGGATGAGCAGGAGGCCCAGTTGAAGAAACTTATGGAGGAA
GTCGAATTGATCTTGTGGGAAAATGAGGGCCATTGTTACACCATGGAATTTCCAAATGTTCCCAGCAAGA
CACTGTAA

Translation (305 aa):
MDWLYRKTLGSIGSCSIETFPWPFYSFFQRIYISTPPGKPENSPETSATEVGEQRPSCLSASPVVEEEEC
EHRPEKNPTRQWPLDSGQGLTKGLKEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQAFESKISARPVTT
TFQKGTREFEGKELEVIDTPDIFSPQNQPEATAKKICDLLASPGPHAVLLVIQVGRYTAEDQAVARCLQE
IFGNTILAYTILVFTRKEDLAEGSLEEYIQENNNKSLDVLDVACERRHCGFNNKAQGDEQEAQLKKLMEE
VELILWENEGHCYTMEFPNVPSKTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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