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Report for CCDS27086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27086.1 Public Mus musculus 14 Oxa1l 23 108 98 CCDS HistoryNCBI Gene:69089Re-query CCDS DB by CCDS ID:27086.1Re-query CCDS DB by GeneID:69089See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000985.6 ENSMUSP00000000985.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000985.6Link to Ensembl Protein Viewer:ENSMUSP00000000985.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000985Re-query CCDS DB by Protein ID:ENSMUSP00000000985
Original member NCBI NM_026936.3 NP_081212.1 Updated not alive Link to Nucleotide Sequence:NM_026936.3Link to Protein Sequence:NP_081212.1Re-query CCDS DB by Nucleotide ID:NM_026936Re-query CCDS DB by Protein ID:NP_081212
Current member NCBI NM_026936.4 NP_081212.1 Accepted alive Link to Nucleotide Sequence:NM_026936.4Link to Protein Sequence:NP_081212.1Re-query CCDS DB by Nucleotide ID:NM_026936Re-query CCDS DB by Protein ID:NP_081212Link to BLAST:NP_081212.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081212.1 433 Q8BGA9 433 100% 0 0

Chromosomal Locations for CCDS 27086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54360855 54360917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54361322 54361468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54363282 54363495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54366709 54366852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54367025 54367110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54367266 54367430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54367588 54367692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54367793 54367955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54368153 54368233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54368318 54368451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGGCGAGGAATTTAGTGTGCGGTCGCTGGCAGCTTCTGCGACTCCTACGACCCCAGCGTTCGTACCATA
GCGTCGCAGTGTCCCTGAGACCGCTGGCCGCCGAGCTCCTCGCAGCCCGCCGGGGTAACGGGCGGCCACC
CTGTGCTCTTCTCGCCGTCTTCACTCCTCGCTGCATCAGTACATCTGCCACCCTCTTTGCAGAAGCCCAG
GTCCAGGCACCCCCTGTTATTCCTGCTACCTCTATCCCTGCTGCAGTACCAGAGGTAGCTTCTGGAGGAG
CTGCAGATGTAGTCCAGTGTGCTACCGAACCGAGCTTCACAGAACTGGGGCTTGGTTCTTACACCCCGGT
GGGTCTCATCCAGAACCTCTTGGAATATATACATGTCGACCTGGGCCTGCCGTGGTGGGGAGCCATTGCC
ACGTGTACTGTCCTTGCCCGATGCCTCGTTTTTCCTCTCATTGTGAAGGGCCAGCGAGAAGCAGCCAAGA
TCCACAACCACATGCCAGAGATGCAGAAGTTTTCCGCTCGAATCAGAGAGGCCAAGTTGGCCGGAGACCA
GGCTGAGTTTTACAAGGCCACCATAGAGATGACACGCTATCAGAAAAAGCATGATATTAAACTCTTGAGA
CCGCTCATCCTACCTCTCACTCAGGCCCCCGTCTTCATCTCCTTCTTTATTGCCTTGAGAGAGATGGCCA
ACCTGCCTGTGCCCAGCCTCCAGACAGGTGGGCTCTGGTGGTTCCAAGATCTCACCGTGTCTGATCCCAT
CTACGTCTTGCCACTGGTAGTCACTGCCACAATGTGGTGTGTCCTTGAGCTAGGTGCTGAGACAGGTGTT
CAGAGCAATGACCTTCAGTTCATGAGGAACATTATCAGGGTGATGCCCCTGGTGGTCTTGCCTGTGACCA
TCCACTTCCCCTCGGCAGTGTTCATGTACTGGCTGTCCTCCAACGTGTTCTCCCTGTGCCAAGTAGCCTG
CCTCCGGATTCCAGCTGTGCGCACAGTGCTGAAGATCCCCCAGCGAGTCGTACATGACCCTGACAAATTG
CCTCCTAGGGAAGGCTTCTTGAAGAGCTTCAAAAAAGGCTGGAAGAACGCTGAAATTGCACAGCAGCTCC
GAGAGCGGGAGCAGCGAATGCAGAAACACTTGGACCTGGCTGCCAGGGGTCCCTTACGACAGACTTTTAC
GCACAACCCTCTGCTGCAGCATGATCCAAGTCACCCCCCGAAAGCTCCCAACAGCAACAACAGCAGCATC
AAAGCAAACGCAAAGAAGCCTTGGCAAGACACACTCGGTTGA

Translation (433 aa):
MARNLVCGRWQLLRLLRPQRSYHSVAVSLRPLAAELLAARRGNGRPPCALLAVFTPRCISTSATLFAEAQ
VQAPPVIPATSIPAAVPEVASGGAADVVQCATEPSFTELGLGSYTPVGLIQNLLEYIHVDLGLPWWGAIA
TCTVLARCLVFPLIVKGQREAAKIHNHMPEMQKFSARIREAKLAGDQAEFYKATIEMTRYQKKHDIKLLR
PLILPLTQAPVFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYVLPLVVTATMWCVLELGAETGV
QSNDLQFMRNIIRVMPLVVLPVTIHFPSAVFMYWLSSNVFSLCQVACLRIPAVRTVLKIPQRVVHDPDKL
PPREGFLKSFKKGWKNAEIAQQLREREQRMQKHLDLAARGPLRQTFTHNPLLQHDPSHPPKAPNSNNSSI
KANAKKPWQDTLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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