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Report for CCDS38029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38029.1 Public Mus musculus 19 Ccdc172 23 108 98 CCDS HistoryNCBI Gene:75645Re-query CCDS DB by CCDS ID:38029.1Re-query CCDS DB by GeneID:75645See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069419.7 ENSMUSP00000068972.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069419.7Link to Ensembl Protein Viewer:ENSMUSP00000068972.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069419Re-query CCDS DB by Protein ID:ENSMUSP00000068972
Current member NCBI NM_001373969.2 NP_001360898.1 Accepted alive Link to Nucleotide Sequence:NM_001373969.2Link to Protein Sequence:NP_001360898.1Re-query CCDS DB by Nucleotide ID:NM_001373969Re-query CCDS DB by Protein ID:NP_001360898Link to BLAST:NP_001360898.1
Original member NCBI NM_029372.2 NP_083648.1 Updated not alive Link to Nucleotide Sequence:NM_029372.2Link to Protein Sequence:NP_083648.1Re-query CCDS DB by Nucleotide ID:NM_029372Re-query CCDS DB by Protein ID:NP_083648
Current member NCBI NM_029372.3 NP_083648.1 Accepted alive Link to Nucleotide Sequence:NM_029372.3Link to Protein Sequence:NP_083648.1Re-query CCDS DB by Nucleotide ID:NM_029372Re-query CCDS DB by Protein ID:NP_083648Link to BLAST:NP_083648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001360898.1 267 Q810N9-1 267 100% 0 0
NP_083648.1 267 Q810N9-1 267 100% 0 0

Chromosomal Locations for CCDS 38029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58512358 58512436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58512617 58512702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58525848 58525964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58527272 58527437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58536561 58536662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58537262 58537364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58551428 58551515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58552852 58552914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGAGTCTGGAGTCCTTGTTTCAGCACATCATCTTCAGTGAGCATCAGGCGGAGGAGAGCCGCAGAGTGA
TGCGGGAAGTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGA
AGAGAAAATCAAGTTGGAATCCAAGGTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAA
ACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCT
GCGAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGA
CAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTA
GACAGCCAGGCAGATGTTTTGAGAAGGGAAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAAC
TCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAGTTCTTAAAGA
TGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCT
CAACATGATCCCGAGTGCGTGCGGCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTG
TCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAGGACAG
TAACTCCTTGAGTCATGAGCCACCCCACACTTGA

Translation (267 aa):
MSLESLFQHIIFSEHQAEESRRVMREVRSEITRCRGKIKKATEDLSEEKIKLESKVQQLSEKSFLLELLK
THENALERQLSEIISERDTLLQACEAIKNKTTEEEERFIKEITDFNDNYEITKKRDTLMKENIEMEMADL
DSQADVLRREMKSVERNRGQLWELQKLKNELLQELFTLQKKLKVLKDEETEAICITKQLEAEKTKVRDKP
QHDPECVRLKRELDLYKAEDMESVYRALQAEVDLLELALAPKDPQDSNSLSHEPPHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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