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Report for CCDS40009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40009.1 Public Mus musculus 7 Homer2 23 108 98 CCDS HistoryNCBI Gene:26557Re-query CCDS DB by CCDS ID:40009.1Re-query CCDS DB by GeneID:26557See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000207983.1 ENSMUSP00000146787.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207983.1Link to Ensembl Protein Viewer:ENSMUSP00000146787.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207983Re-query CCDS DB by Protein ID:ENSMUSP00000146787
Original member Current member NCBI NM_011983.2 NP_036113.1 Accepted alive Link to Nucleotide Sequence:NM_011983.2Link to Protein Sequence:NP_036113.1Re-query CCDS DB by Nucleotide ID:NM_011983Re-query CCDS DB by Protein ID:NP_036113Link to BLAST:NP_036113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036113.1 354 Q9QWW1-1 354 100% 0 0

Chromosomal Locations for CCDS 40009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81610253 81610441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81611306 81611386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81612261 81612371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81614343 81614499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81618576 81618715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81624252 81624344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81636361 81636492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81649554 81649710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81706759 81706763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGGAGAACAGCCCATCTTCACCACGCGAGCGCACGTCTTCCAGATTGACCCCAGCACCAAGAAGAACT
GGGTGCCGGCAAGCAAGCAGGCCGTCACGGTTTCCTACTTCTATGATGTCACCAGGAACAGCTATCGGAT
CATCAGTGTGGATGGAGCCAAGGTGATCATAAACAGCACTATCACCCCGAACATGACTTTCACCAAAACG
TCACAGAAGTTCGGGCAGTGGGCTGACAGCAGAGCCAACACCGTGTTCGGTTTGGGATTCTCCTCCGAGC
TGCAGCTCACGAAGTTTGCAGAGAAGTTCCAGGAGGTAAGAGAAGCTGCCAGGCTAGCCAGAGACAAGTC
CCAGGAGAAAACCGAGACCTCCAGCAATCATTCCCAAGAATCTGGGTGTGAAACCCCGTCTTCCACTCAG
GCATCCAGCGTCAATGGCACAGACGACGAAAAGGCCTCTCACGCGAGCCCAGCCGACACTCACCTCAAGT
CTGAGAATGACAAGCTGAAGATCGCGCTGACACAGAGTGCTGCCAATGTGAAGAAGTGGGAGATGGAGCT
GCAGACCCTGCGGGAGAGCAACGCCCGGCTGACCACGGCACTGCAGGAGTCGGCGGCCAGCGTGGAGCAG
TGGAAGCGGCAGTTCTCCATCTGCAGGGACGAGAATGACAGGCTCCGCAGCAAGATCGAGGAGCTGGAAG
AACAGTGCAGCGAGATAAACAGGGAGAAGGAGAAGAACACACAGCTGAAGAGGAGGATCGAGGAGCTGGA
GTCAGAGGTCCGAGACAAGGAGATGGAGTTGAAAGATCTCCGAAAACAGAGTGAAATCATACCTCAGCTC
ATGTCCGAGTGTGAATATGTCTCTGAGAAGTTAGAGGCGGCCGAAAGAGACAATCAAAACTTGGAAGACA
AAGTGCGGTCTCTAAAGACAGACATCGAGGAGAGTAAATACCGACAGCGCCACCTGAAGGGGGAGCTGAA
GAGCTTCCTTGAGGTGCTGGATGGAAAGATCGACGACCTCCATGACTTCCGTAGAGGACTCTCCAAGTTA
GGCACAGATAACTAG

Translation (354 aa):
MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTITPNMTFTKT
SQKFGQWADSRANTVFGLGFSSELQLTKFAEKFQEVREAARLARDKSQEKTETSSNHSQESGCETPSSTQ
ASSVNGTDDEKASHASPADTHLKSENDKLKIALTQSAANVKKWEMELQTLRESNARLTTALQESAASVEQ
WKRQFSICRDENDRLRSKIEELEEQCSEINREKEKNTQLKRRIEELESEVRDKEMELKDLRKQSEIIPQL
MSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESKYRQRHLKGELKSFLEVLDGKIDDLHDFRRGLSKL
GTDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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