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Report for CCDS29103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29103.1 Public Mus musculus 18 Elp2 23 108 98 CCDS HistoryNCBI Gene:58523Re-query CCDS DB by CCDS ID:29103.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234266.1 ENSMUSP00000157109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234266.1Link to Ensembl Protein Viewer:ENSMUSP00000157109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234266Re-query CCDS DB by Protein ID:ENSMUSP00000157109
Original member Current member NCBI NM_021448.2 NP_067423.2 Accepted alive Link to Nucleotide Sequence:NM_021448.2Link to Protein Sequence:NP_067423.2Re-query CCDS DB by Nucleotide ID:NM_021448Re-query CCDS DB by Protein ID:NP_067423Link to BLAST:NP_067423.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067423.2 831 Q91WG4-1 831 100% 0 0

Chromosomal Locations for CCDS 29103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24603995 24604132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24606857 24606935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24609630 24609700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24611913 24612069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24612448 24612525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24614416 24614480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24615161 24615227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24615889 24616026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24617401 24617496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24619078 24619178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24619382 24619513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24622079 24622237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24622479 24622667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24625512 24625578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24626125 24626217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24626388 24626445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24626995 24627067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24631359 24631551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24632759 24632880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24634339 24634472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24634901 24635008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24638394 24638571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2496 nt):
ATGGTTTCTTCTGTGCTGGAGGTGTCTCATGTGTTTTGCTGCCCGAACCGGGTTCGAGGAGCTTTGAGTT
GGAATACCGGGCCCGGAGGACTCCTGGCTTTCGGCACATCCTGCTCCGTTGTGCTCTATGACCCTCAGAA
AAAAGTGGTTATTACCAATCTGAATGGCCACACCGCTCGAGTCAACTGCCTGCAGTGGATACGTACAGAG
GATGGCTCCCCTTCCAATGAGCTGGTGTCTGGAGGATCTGACAATCGGGTGATTCATTGGGAACTAGAGA
ATAATCAGGTTTTAAAATCAGTCCGTCTCCAAGGCCATGAAGGACCTGTTTGTGCTGTGCACGCTATTTA
CCAGAGTGGGCCATCCGAAGGGGAGCAGCATGCGCTGATAGCTTCTGCAGCTTCAGATTCTACTGTGCGA
ATCTGGTCTAAAAAGGGGTCTGAAGTCAAATACCTTCAGACCTTGAGCTTCAGGGATGGATTCGTTCTTT
CTGTCTGCCTGGCTATTTTGCCTGGTACTAATGTGCCAGTATTAGCATGTGGTGATGATGACTGCAGAAT
TCACTTATATATTCAACAGGATGACCAGTTTCAGAAAGCTCTTTCTCTCTGCGGACACGAGGACTGGATA
AGAGGCGTGGAATGGGCAACCTTTGGTAGAGACCTTTTCCTAGCAAGCTGCTCACAGGACTGCCTAATAA
GAATATGGAGACTGTATATGAAACCAGCATCTTTCGAAACCAAGGATGGTAGTTTAAGGCTGAAGGAAAA
CACGTTCACTATAAAGGATGGCGGTGTTAGAACAACGGTTGCGGTTACCCTGGAGACAGTGCTGGCTGGA
CACGAAAACTGGGTAAACGCAGTTCATTGGCAGCCTTCATTTTACAAAGATGGTGTTCTGCAGCAGCCAG
TGAGACTGCTGTCTGCCTCCATGGACAAAACCATGATTCTCTGGGCTCCAGATGAAGAGTCAGGGGTTTG
GTTAGAACAGGTCCGAGTAGGTGAAGTAGGTGGAAATACCCTGGGGTTTTATGATTGCCAGTTCGGTGAA
AATGGCACCATGATCATCGCTCATGCATTCCACGGAGCACTGCACCTTTGGAAACAGAGTACCGTAAACC
CAAGGCAGTGGGCTCCAGAGATTGTCATTTCAGGTCACTTCGATGGCGTCCAAGACCTGATGTGGGATCC
AGAGGGAGAGTTCATCATCACTACCAGCACCGATCAGACCACTCGCCTTTTCGCTCCATGGAAGAAGAAG
GACCAGAAGGACCGATCACAGGTCACTTGGCATGAGATCGCAAGGCCTCAGATACATGGATACAACATCA
AGTGTTTGGCGATGATTGATCGGTTTCAGTTTGTGTCTGGAGCAGACGAGAAAGTTCTTCGTGTTTTTTC
TGCTCCTCGGAATTTTGTGGAAAATTTTAGTGTCATTTCCAGACAGTCACTAAGTCACATGCTCTGTGAT
GACCAAGATCTTCCAGAAGGAGCCACTGTTCCTGCATTAGGGCTGTCAAATAAAGCTCTCTTTCAGGGAG
ACATAGCCTCTCAGCCCTTTGAGGAGGATGAACTCATAAGCCCTGCCTTTGGGTCTCCCCAGGTGACCTT
TCAGCCCGCTGTCCTTAATGAACCTCCCACTGAGGATCACCTTCTGCAGAACACCCTGTGGCCTGAGATT
CAGAAACTGTACGGACATGGCTATGAGATAGTTTGTGTGGCCTGTAACAATTCCAAGACTCTACTTGCCT
CTGCTTGTAAGGCATCTCAGAAGGAGCACGCAGCTATCATTCTTTGGAGCACGGCATCTTGGAAACAAGT
GCAGAGTCTTGCTTTCCACACTCTGACTGTCACACAGATGACATTCTCACCTGATGACAAGTTCTTACTG
GCTGTTTCCAGAGATCGAACCTGGTCTTTGTGGAAGAGACAGGATGCGACTTCCTCGGAGTTTGATCCAT
TTTTTAGTCTCTTTGCATTCACCAACAAAATTACTTCTGTGCATAGTAGAATCATTTGGTCTTGTGACTG
GAGTCCTGATAACAAGTACTTCTTCACTGGAAGTCGAGACAAAAAGGTGGTTGTCTGGGGCGAGTGTAAG
TCCAGCCATAACCCCATGGAGCACCCGATCCGTCCCTGCTCCTCGATCCTGGATGTGGGCAGTTCTGTGA
CAGCTGTCAGTGTCTGCCCTGTGCTTAACCCAGCCCAGAGATACATTGTTGCAATTGGATTAGAGAGTGG
GAAGATTTGTATATACTCCTGGAACAAGACCAACCAAGAAATCAATGACTGGACCAGCTGTGTAGAAACA
AATCCAAGCCAGAGTCACAGCCTGGGTATCAGAAGGTTATGCTGGAAGAGCTGCAGCGATGACGACGACG
ATGATGACGATGACGACACCGAGCAGAGTGAAGAGGGGCCGGAGTGGTTGCATTTTGCAAGCTGTGGCGA
GGACCATACCGTGAAGATTTACAGGGTTAACAGACGCGCACTGTGA

Translation (831 aa):
MVSSVLEVSHVFCCPNRVRGALSWNTGPGGLLAFGTSCSVVLYDPQKKVVITNLNGHTARVNCLQWIRTE
DGSPSNELVSGGSDNRVIHWELENNQVLKSVRLQGHEGPVCAVHAIYQSGPSEGEQHALIASAASDSTVR
IWSKKGSEVKYLQTLSFRDGFVLSVCLAILPGTNVPVLACGDDDCRIHLYIQQDDQFQKALSLCGHEDWI
RGVEWATFGRDLFLASCSQDCLIRIWRLYMKPASFETKDGSLRLKENTFTIKDGGVRTTVAVTLETVLAG
HENWVNAVHWQPSFYKDGVLQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDCQFGE
NGTMIIAHAFHGALHLWKQSTVNPRQWAPEIVISGHFDGVQDLMWDPEGEFIITTSTDQTTRLFAPWKKK
DQKDRSQVTWHEIARPQIHGYNIKCLAMIDRFQFVSGADEKVLRVFSAPRNFVENFSVISRQSLSHMLCD
DQDLPEGATVPALGLSNKALFQGDIASQPFEEDELISPAFGSPQVTFQPAVLNEPPTEDHLLQNTLWPEI
QKLYGHGYEIVCVACNNSKTLLASACKASQKEHAAIILWSTASWKQVQSLAFHTLTVTQMTFSPDDKFLL
AVSRDRTWSLWKRQDATSSEFDPFFSLFAFTNKITSVHSRIIWSCDWSPDNKYFFTGSRDKKVVVWGECK
SSHNPMEHPIRPCSSILDVGSSVTAVSVCPVLNPAQRYIVAIGLESGKICIYSWNKTNQEINDWTSCVET
NPSQSHSLGIRRLCWKSCSDDDDDDDDDDTEQSEEGPEWLHFASCGEDHTVKIYRVNRRAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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