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Report for CCDS35417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35417.1 Public Homo sapiens X MAGEC1 24 110 108 CCDS HistoryNCBI Gene:9947Re-query CCDS DB by CCDS ID:35417.1Re-query CCDS DB by GeneID:9947See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285879.5 ENSP00000285879.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285879.5Link to Ensembl Protein Viewer:ENSP00000285879.4Re-query CCDS DB by Nucleotide ID:ENST00000285879Re-query CCDS DB by Protein ID:ENSP00000285879
Original member Current member NCBI NM_005462.5 NP_005453.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005462.5Link to Protein Sequence:NP_005453.2Re-query CCDS DB by Nucleotide ID:NM_005462Re-query CCDS DB by Protein ID:NP_005453Link to BLAST:NP_005453.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005453.2 1142 O60732-1 1142 100% 0 0

Chromosomal Locations for CCDS 35417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 141905073 141905076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 141905409 141908833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3429 nt):
ATGGGGGACAAGGATATGCCTACTGCTGGGATGCCGAGTCTTCTCCAGAGTTCCTCTGAGAGTCCTCAGA
GTTGTCCTGAGGGGGAGGACTCCCAGTCTCCTCTCCAGATTCCCCAGAGTTCTCCTGAGAGCGACGACAC
CCTGTATCCTCTCCAGAGTCCTCAGAGTCGTTCTGAGGGGGAGGACTCCTCGGATCCTCTCCAGAGACCT
CCTGAGGGGAAGGACTCCCAGTCTCCTCTCCAGATTCCCCAGAGTTCTCCTGAGGGCGACGACACCCAGT
CTCCTCTCCAGAATTCTCAGAGTTCTCCTGAGGGGAAGGACTCCCTGTCTCCTCTAGAGATTTCTCAGAG
CCCTCCTGAGGGTGAGGATGTCCAGTCTCCTCTGCAGAATCCTGCGAGTTCCTTCTTCTCCTCTGCTTTA
TTGAGTATTTTCCAGAGTTCCCCTGAGAGTACTCAAAGTCCTTTTGAGGGTTTTCCCCAGTCTGTTCTCC
AGATTCCTGTGAGCGCCGCCTCCTCCTCCACTTTAGTGAGTATTTTCCAGAGTTCCCCTGAGAGTACTCA
AAGTCCTTTTGAGGGTTTTCCCCAGTCTCCACTCCAGATTCCTGTGAGCCGCTCCTTCTCCTCCACTTTA
TTGAGTATTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTGCCCAGTCTCCTCTCC
AGATTCCTGTGAGCCCCTCCTCCTCCTCCACTTTACTGAGTCTTTTCCAGAGTTTCTCTGAGAGAACTCA
GAGTACTTTTGAGGGTTTTGCCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTA
GTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTCCCCAGTCTCCTCTCC
AGATTCCTGTGAGCTCCTCCTCCTCCTCCACTTTATTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCA
CAGTACTTTTGAGGGTTTTCCCCAGTCTCTTCTCCAGATTCCTATGACCTCCTCCTTCTCCTCTACTTTA
TTGAGTATTTTCCAGAGTTCTCCTGAGAGTGCTCAAAGTACTTTTGAGGGTTTTCCCCAGTCTCCTCTCC
AGATTCCTGGGAGCCCCTCCTTCTCCTCCACTTTACTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCA
CAGTACTTTTGAGGGTTTTCCCCAGTCTCCTCTCCAGATTCCTATGACCTCCTCCTTCTCCTCTACTTTA
TTGAGTATTTTACAGAGTTCTCCTGAGAGTGCTCAAAGTGCTTTTGAGGGTTTTCCCCAGTCTCCTCTCC
AGATTCCTGTGAGCTCCTCTTTCTCCTACACTTTATTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCA
CAGTACTTTTGAGGGTTTTCCCCAGTCTCCTCTCCAGATTCCTGTGAGCTCCTCCTCCTCCTCCTCCACT
TTATTGAGTCTTTTCCAGAGTTCCCCTGAGTGTACTCAAAGTACTTTTGAGGGTTTTCCCCAGTCTCCTC
TCCAGATTCCTCAGAGTCCTCCTGAAGGGGAGAATACCCATTCTCCTCTCCAGATTGTTCCAAGTCTTCC
TGAGTGGGAGGACTCCCTGTCTCCTCACTACTTTCCTCAGAGCCCTCCTCAGGGGGAGGACTCCCTATCT
CCTCACTACTTTCCTCAGAGCCCTCCTCAGGGGGAGGACTCCCTGTCTCCTCACTACTTTCCTCAGAGCC
CTCAGGGGGAGGACTCCCTGTCTCCTCACTACTTTCCTCAGAGCCCTCCTCAGGGGGAGGACTCCATGTC
TCCTCTCTACTTTCCTCAGAGTCCTCTTCAGGGGGAGGAATTCCAGTCTTCTCTCCAGAGCCCTGTGAGC
ATCTGCTCCTCCTCCACTCCATCCAGTCTTCCCCAGAGTTTCCCTGAGAGTTCTCAGAGTCCTCCTGAGG
GGCCTGTCCAGTCTCCTCTCCATAGTCCTCAGAGCCCTCCTGAGGGGATGCACTCCCAATCTCCTCTCCA
GAGTCCTGAGAGTGCTCCTGAGGGGGAGGATTCCCTGTCTCCTCTCCAAATTCCTCAGAGTCCTCTTGAG
GGAGAGGACTCCCTGTCTTCTCTCCATTTTCCTCAGAGTCCTCCTGAGTGGGAGGACTCCCTCTCTCCTC
TCCACTTTCCTCAGTTTCCTCCTCAGGGGGAGGACTTCCAGTCTTCTCTCCAGAGTCCTGTGAGTATCTG
CTCCTCCTCCACTTCTTTGAGTCTTCCCCAGAGTTTCCCTGAGAGTCCTCAGAGTCCTCCTGAGGGGCCT
GCTCAGTCTCCTCTCCAGAGACCTGTCAGCTCCTTCTTCTCCTACACTTTAGCGAGTCTTCTCCAAAGTT
CCCATGAGAGTCCTCAGAGTCCTCCTGAGGGGCCTGCCCAGTCTCCTCTCCAGAGTCCTGTGAGCTCCTT
CCCCTCCTCCACTTCATCGAGTCTTTCCCAGAGTTCTCCTGTGAGCTCCTTCCCCTCCTCCACTTCATCG
AGTCTTTCCAAGAGTTCCCCTGAGAGTCCTCTCCAGAGTCCTGTGATCTCCTTCTCCTCCTCCACTTCAT
TGAGCCCATTCAGTGAAGAGTCCAGCAGCCCAGTAGATGAATATACAAGTTCCTCAGACACCTTGCTAGA
GAGTGATTCCTTGACAGACAGCGAGTCCTTGATAGAGAGCGAGCCCTTGTTCACTTATACACTGGATGAA
AAGGTGGACGAGTTGGCGCGGTTTCTTCTCCTCAAATATCAAGTGAAGCAGCCTATCACAAAGGCAGAGA
TGCTGACGAATGTCATCAGCAGGTACACGGGCTACTTTCCTGTGATCTTCAGGAAAGCCCGTGAGTTCAT
AGAGATACTTTTTGGCATTTCCCTGAGAGAAGTGGACCCTGATGACTCCTATGTCTTTGTAAACACATTA
GACCTCACCTCTGAGGGGTGTCTGAGTGATGAGCAGGGCATGTCCCAGAACCGCCTCCTGATTCTTATTC
TGAGTATCATCTTCATAAAGGGCACCTATGCCTCTGAGGAGGTCATCTGGGATGTGCTGAGTGGAATAGG
GGTGCGTGCTGGGAGGGAGCACTTTGCCTTTGGGGAGCCCAGGGAGCTCCTCACTAAAGTTTGGGTGCAG
GAACATTACCTAGAGTACCGGGAGGTGCCCAACTCTTCTCCTCCTCGTTACGAATTCCTGTGGGGTCCAA
GAGCTCATTCAGAAGTCATTAAGAGGAAAGTAGTAGAGTTTTTGGCCATGCTAAAGAATACCGTCCCTAT
TACCTTTCCATCCTCTTACAAGGATGCTTTGAAAGATGTGGAAGAGAGAGCCCAGGCCATAATTGACACC
ACAGATGATTCGACTGCCACAGAAAGTGCAAGCTCCAGTGTCATGTCCCCCAGCTTCTCTTCTGAGTGA

Translation (1142 aa):
MGDKDMPTAGMPSLLQSSSESPQSCPEGEDSQSPLQIPQSSPESDDTLYPLQSPQSRSEGEDSSDPLQRP
PEGKDSQSPLQIPQSSPEGDDTQSPLQNSQSSPEGKDSLSPLEISQSPPEGEDVQSPLQNPASSFFSSAL
LSIFQSSPESTQSPFEGFPQSVLQIPVSAASSSTLVSIFQSSPESTQSPFEGFPQSPLQIPVSRSFSSTL
LSIFQSSPERTQSTFEGFAQSPLQIPVSPSSSSTLLSLFQSFSERTQSTFEGFAQSSLQIPVSPSFSSTL
VSLFQSSPERTQSTFEGFPQSPLQIPVSSSSSSTLLSLFQSSPERTHSTFEGFPQSLLQIPMTSSFSSTL
LSIFQSSPESAQSTFEGFPQSPLQIPGSPSFSSTLLSLFQSSPERTHSTFEGFPQSPLQIPMTSSFSSTL
LSILQSSPESAQSAFEGFPQSPLQIPVSSSFSYTLLSLFQSSPERTHSTFEGFPQSPLQIPVSSSSSSST
LLSLFQSSPECTQSTFEGFPQSPLQIPQSPPEGENTHSPLQIVPSLPEWEDSLSPHYFPQSPPQGEDSLS
PHYFPQSPPQGEDSLSPHYFPQSPQGEDSLSPHYFPQSPPQGEDSMSPLYFPQSPLQGEEFQSSLQSPVS
ICSSSTPSSLPQSFPESSQSPPEGPVQSPLHSPQSPPEGMHSQSPLQSPESAPEGEDSLSPLQIPQSPLE
GEDSLSSLHFPQSPPEWEDSLSPLHFPQFPPQGEDFQSSLQSPVSICSSSTSLSLPQSFPESPQSPPEGP
AQSPLQRPVSSFFSYTLASLLQSSHESPQSPPEGPAQSPLQSPVSSFPSSTSSSLSQSSPVSSFPSSTSS
SLSKSSPESPLQSPVISFSSSTSLSPFSEESSSPVDEYTSSSDTLLESDSLTDSESLIESEPLFTYTLDE
KVDELARFLLLKYQVKQPITKAEMLTNVISRYTGYFPVIFRKAREFIEILFGISLREVDPDDSYVFVNTL
DLTSEGCLSDEQGMSQNRLLILILSIIFIKGTYASEEVIWDVLSGIGVRAGREHFAFGEPRELLTKVWVQ
EHYLEYREVPNSSPPRYEFLWGPRAHSEVIKRKVVEFLAMLKNTVPITFPSSYKDALKDVEERAQAIIDT
TDDSTATESASSSVMSPSFSSE


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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