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Report for CCDS43572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43572.1 Public Homo sapiens 7 URGCP 24 110 108 CCDS HistoryNCBI Gene:55665Re-query CCDS DB by CCDS ID:43572.1Re-query CCDS DB by GeneID:55665See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43572.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336086.10 ENSP00000336872.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336086.10Link to Ensembl Protein Viewer:ENSP00000336872.6Re-query CCDS DB by Nucleotide ID:ENST00000336086Re-query CCDS DB by Protein ID:ENSP00000336872
Original member Current member EBI ENST00000443736.5 ENSP00000392136.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443736.5Link to Ensembl Protein Viewer:ENSP00000392136.1Re-query CCDS DB by Nucleotide ID:ENST00000443736Re-query CCDS DB by Protein ID:ENSP00000392136
Original member Current member NCBI NM_001077664.3 NP_001071132.1 Accepted alive Link to Nucleotide Sequence:NM_001077664.3Link to Protein Sequence:NP_001071132.1Re-query CCDS DB by Nucleotide ID:NM_001077664Re-query CCDS DB by Protein ID:NP_001071132Link to BLAST:NP_001071132.1
Original member Current member NCBI NM_001290075.2 NP_001277004.1 Accepted alive Link to Nucleotide Sequence:NM_001290075.2Link to Protein Sequence:NP_001277004.1Re-query CCDS DB by Nucleotide ID:NM_001290075Re-query CCDS DB by Protein ID:NP_001277004Link to BLAST:NP_001277004.1
Original member Current member NCBI NM_001290076.2 NP_001277005.1 Accepted alive Link to Nucleotide Sequence:NM_001290076.2Link to Protein Sequence:NP_001277005.1Re-query CCDS DB by Nucleotide ID:NM_001290076Re-query CCDS DB by Protein ID:NP_001277005Link to BLAST:NP_001277005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071132.1 888 Q8TCY9-4 888 100% 0 0
NP_001277004.1 888 Q8TCY9-4 888 100% 0 0
NP_001277005.1 888 Q8TCY9-4 888 100% 0 0

Chromosomal Locations for CCDS 43572.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43876667 43879260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43881659 43881697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43881907 43881940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGGAAGGAGATGATTGCGAGTTCCGTTATGGAGATGGTACAAATGAGGCTCAGGACAATGATTTTCCAA
CAGTGGAGAGAAGCAGGCTTCAAGAAATGCTGTCACTTTTGGGCCTAGAGACGTACCAGGTCCAGAAACT
CAGCCTCCAGGACTCTCTGCAGATCAGTTTTGACAGTATGAAGAACTGGGCCCCTCAGGTTCCCAAAGAC
TTGCCCTGGAATTTCCTCAGGAAGTTGCAGGCCCTCAATGCTGATGCCAGGAATACCACTATGGTGCTGG
ACGTGCTCCCAGACGCCAGGCCTGTGGAGAAGGAGAGCCAGATGGAAGAGGAGATCATCTACTGGGACCC
AGCTGATGACCTTGCTGCCGACATTTATTCCTTTTCTGAGCTGCCCACCCCTGATACGCCAGTGAACCCC
TTAGACCTTCTCTGTGCCCTGCTGCTCTCCTCAGACAGTTTCCTGCAACAAGAAATAGCGTTGAAAATGG
CCCTCTGCCAGTTTGCACTCCCACTCGTGTTGCCTGACTCGGAGAACCACTACCATACATTTCTGCTGTG
GGCCATGCGGGGCATTGTGAGGACATGGTGGTCCCAGCCCCCAAGGGGCATGGGGAGCTTCCGGGAAGAC
AGCGTGGTCTTGTCCAGGGCGCCCGCCTTCGCCTTCGTGCGCATGGACGTCAGTAGCAACTCCAAGTCCC
AGCTTCTCAACGCCGTCCTCAGCCCGGGCCACAGGCAGTGGGACTGCTTCTGGCATCGGGACCTCAACTT
GGGCACCAATGCCCGGGAGATTTCGGATGGGTTGGTAGAAATTTCCTGGTTTTTTCCCAGCGGAAGGGAG
GACTTGGACATTTTCCCAGAACCTGTGGCCTTTCTGAACCTGAGAGGTGACATCGGGTCTCACTGGCTGC
AGTTTAAGCTCTTGACAGAAATCTCCTCCGCTGTGTTTATATTGACTGACAATATCAGTAAGAAGGAATA
CAAATTGCTGTACTCCATGAAGGAGTCAACCACAAAATACTACTTCATCCTGAGTCCCTACCGTGGGAAG
CGCAACACAAACCTGAGATTTCTGAATAAGTTAATTCCTGTGCTGAAAATAGACCACTCACATGTCCTGG
TAAAGGTCAGCAGCACTGACAGCGACAGCTTCGTGAAGAGGATCCGGGCCATCGTTGGGAATGTGCTGCG
GGCACCCTGCAGGCGGGTATCTGTGGAGGACATGGCGCACGCAGCCCGCAAACTGGGCCTAAAGGTCGAC
GAGGACTGTGAGGAGTGTCAGAAAGCGAAAGACCGGATGGAGAGGATTACCAGGAAAATCAAAGACTCGG
ATGCCTACAGAAGGGACGAGCTGAGGCTGCAGGGGGACCCCTGGAGAAAGGCAGCCCAAGTGGAGAAGGA
GTTCTGCCAGCTCCAGTGGGCCGTGGACCCCCCTGAGAAGCACAGGGCTGAGCTGAGGCGGCGGCTGCTA
GAACTTCGAATGCAGCAGAACGGCCATGATCCCTCCTCGGGGGTGCAGGAGTTCATCTCGGGGATCAGCA
GCCCCTCCTTGAGTGAGAAGCAGTACTTCCTGAGGTGGATGGAGTGGGGCCTGGCACGGGTGGCCCAGCC
GCGACTGAGACAGCCTCCGGAGACGCTTCTCACCCTGAGACCAAAGCATGGGGGCACCACAGACGTGGGG
GAGCCGCTCTGGCCTGAGCCCCTAGGGGTGGAACACTTCTTGCGGGAGATGGGACAGTTTTATGAGGCTG
AGAGCTGTCTTGTGGAGGCAGGGAGGCTGCCGGCAGGCCAGAGGCGTTTTGCCCACTTCCCAGGCTTGGC
CTCGGAGCTGCTGCTGACAGGGCTGCCTCTGGAGCTAATCGATGGGAGCACGCTGAGCATGCCCGTCCGC
TGGGTCACAGGGCTCCTGAAGGAGCTGCACGTCCGACTGGAGAGACGGTCAAGGCTGGTGGTTCTGTCAA
CCGTCGGGGTGCCAGGCACGGGCAAGTCCACACTCCTCAACACCATGTTTGGGCTGCGGTTTGCCACAGG
GAAGAGCTGCGGTCCTCGAGGGGCCTTCATGCAGCTCATCACAGTGGCTGAGGGCTTCAGCCAGGACCTG
GGCTGTGACCACATCCTGGTGATAGACTCCGGGGGCTTGATAGGTGGGGCCTTGACGTCAGCTGGGGACA
GATTTGAGCTGGAGGCTTCCTTGGCCACTCTGCTCATGGGACTGAGCAATGTCACCGTGATCAGTCTAGC
TGAAACCAAGGACATTCCAGCAGCTATTCTGCATGCATTTCTGAGGTTAGAAAAAACGGGGCACATGCCC
AACTACCAGTTTGTATACCAGAACCTTCATGATGTATCTGTTCCCGGCCCTAGGCCCAGAGACAAGAGAC
AGCTCCTGGATCCACCTGGTGACCTGAGCAGGGCTGCAGCCCAGATGGAGAAACAGGGCGACGGCTTCCG
GGCACTGGCAGGCCTGGCCTTCTGCGACCCTGAGAAGCAGCACATCTGGCACATCCCAGGCCTGTGGCAC
GGAGCACCTCCCATGGCCGCAGTGAGCTTGGCCTACAGTGAAGCCATATTTGAATTGAAGAGATGCCTAC
TCGAAAACATCAGGAACGGCTTGTCGAACCAAAACAAAAACATCCAGCAGCTCATTGAGCTGGTGAGACG
GCTGTGA

Translation (888 aa):
MEGDDCEFRYGDGTNEAQDNDFPTVERSRLQEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKD
LPWNFLRKLQALNADARNTTMVLDVLPDARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTPVNP
LDLLCALLLSSDSFLQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWWSQPPRGMGSFRED
SVVLSRAPAFAFVRMDVSSNSKSQLLNAVLSPGHRQWDCFWHRDLNLGTNAREISDGLVEISWFFPSGRE
DLDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFILTDNISKKEYKLLYSMKESTTKYYFILSPYRGK
RNTNLRFLNKLIPVLKIDHSHVLVKVSSTDSDSFVKRIRAIVGNVLRAPCRRVSVEDMAHAARKLGLKVD
EDCEECQKAKDRMERITRKIKDSDAYRRDELRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLL
ELRMQQNGHDPSSGVQEFISGISSPSLSEKQYFLRWMEWGLARVAQPRLRQPPETLLTLRPKHGGTTDVG
EPLWPEPLGVEHFLREMGQFYEAESCLVEAGRLPAGQRRFAHFPGLASELLLTGLPLELIDGSTLSMPVR
WVTGLLKELHVRLERRSRLVVLSTVGVPGTGKSTLLNTMFGLRFATGKSCGPRGAFMQLITVAEGFSQDL
GCDHILVIDSGGLIGGALTSAGDRFELEASLATLLMGLSNVTVISLAETKDIPAAILHAFLRLEKTGHMP
NYQFVYQNLHDVSVPGPRPRDKRQLLDPPGDLSRAAAQMEKQGDGFRALAGLAFCDPEKQHIWHIPGLWH
GAPPMAAVSLAYSEAIFELKRCLLENIRNGLSNQNKNIQQLIELVRRL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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