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Report for CCDS30118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30118.1 Public Mus musculus X Or11n2 23 108 98 CCDS HistoryNCBI Gene:257978Re-query CCDS DB by CCDS ID:30118.1Re-query CCDS DB by GeneID:257978See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070304.2 ENSMUSP00000065196.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070304.2Link to Ensembl Protein Viewer:ENSMUSP00000065196.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000070304Re-query CCDS DB by Protein ID:ENSMUSP00000065196
Original member Current member EBI ENSMUST00000217355.2 ENSMUSP00000150512.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217355.2Link to Ensembl Protein Viewer:ENSMUSP00000150512.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217355Re-query CCDS DB by Protein ID:ENSMUSP00000150512
Original member Current member NCBI NM_001011794.1 NP_001011794.1 Accepted alive Link to Nucleotide Sequence:NM_001011794.1Link to Protein Sequence:NP_001011794.1Re-query CCDS DB by Nucleotide ID:NM_001011794Re-query CCDS DB by Protein ID:NP_001011794Link to BLAST:NP_001011794.1

Chromosomal Locations for CCDS 30118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49885469 49886401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGACTCAAATTTCAGAAATTATTCTTTTGGGTTTTGGAGATCTCCATGGCCTTCAGTTTCTTCTTTTTG
GGCTATTTCTAGCCATTTATGTTATGACTCTCCTGGGTAACATTGTAATTCTCACCGTAGTATCCACTGA
TTGCTCCCTTCACACACCCATGTATTTCTTTCTTGGCCACTTCTCCTTCCTAGAGATCAGCTACACCACA
ACAATTGAGCCTGTAATGCTGTGGACATTGTTATCGGCTCATGTGCCTATCTCCTTGCCAGCCTGTGCTT
GTCAGTTTTACTTTTTTGCATCTTTGGTGGCAACAGAATGCTTCCTCCTTGCTGTAATGTCTTATGATAG
ATACATAGCCATTTGTAACCCACTACACTATTCCAGTATCATGGACTCCTGGGGTTGTTTCCAGCTAGCA
TTGGCCTCTTGGTTGGCTGGATTTCTGGCACCTATCTTACTCATGATCTTGATTTTTCGCTTAACATTTT
GTTCTGCCAATGAGATTGACCACTTCTTCTGTGATTTGAAGCCCATCATGAAACTGGCCTGCACTAATAC
TCAAGTAGCTGAAATGACTTCTTTTATATGTACCTCATTATTCGCTCTTGGTCCCTTCATACTGACCTTG
GCTTCCTATATTCACATCATTTGCACCATTCTGAGGATCCCTTCGACCACAGGGAAGCAGAGGGCTTTCT
CCACCTGTTCATCTCACCTTATAGTGGTCAGTCTTTATTATGGGACTCTGGGCATTGTCTATGGCTTCCC
ATCAATGCCTCAATATGAAAGTATATTGAAGTTGCTTTCTCTTCTGTATACAGTGTTTACCCCTGCTGCC
AATCCTATCATTTACACCCTAAGGAACAAGGATGTGAAGGTAGCTCTGAGAAAATTGACACAATGGCATA
CATACCTGGTCAAAGAAGGCTAA

Translation (310 aa):
MTQISEIILLGFGDLHGLQFLLFGLFLAIYVMTLLGNIVILTVVSTDCSLHTPMYFFLGHFSFLEISYTT
TIEPVMLWTLLSAHVPISLPACACQFYFFASLVATECFLLAVMSYDRYIAICNPLHYSSIMDSWGCFQLA
LASWLAGFLAPILLMILIFRLTFCSANEIDHFFCDLKPIMKLACTNTQVAEMTSFICTSLFALGPFILTL
ASYIHIICTILRIPSTTGKQRAFSTCSSHLIVVSLYYGTLGIVYGFPSMPQYESILKLLSLLYTVFTPAA
NPIIYTLRNKDVKVALRKLTQWHTYLVKEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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