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Report for CCDS29668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29668.1 Public Mus musculus 19 Or10w1 23 108 98 CCDS HistoryNCBI Gene:258098Re-query CCDS DB by CCDS ID:29668.1Re-query CCDS DB by GeneID:258098See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080162.1 ENSMUSP00000079057.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080162.1Link to Ensembl Protein Viewer:ENSMUSP00000079057.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000080162Re-query CCDS DB by Protein ID:ENSMUSP00000079057
Original member Current member NCBI NM_001011832.1 NP_001011832.1 Accepted alive Link to Nucleotide Sequence:NM_001011832.1Link to Protein Sequence:NP_001011832.1Re-query CCDS DB by Nucleotide ID:NM_001011832Re-query CCDS DB by Protein ID:NP_001011832Link to BLAST:NP_001011832.1

Chromosomal Locations for CCDS 29668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13654446 13655396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGACTTGGAAGAACCACTCATTGTTCATGGAATTTGTGTTCCTTGCCTATCCAAAACGTCCAGAGCTAC
GTATGCTCTGCTTCTTTGGAGTTAGCCTGGCTTATGGATTGATAATCTCTGGGAATATCCTTATTGTGGT
CTCCATCCAGACTGAAACACGTCTACATACACCCATGTACTATTTCCTGGGCAGCCTCTCAGGGATAGAG
CTATGTTACACTGCAGTGGTGGTACCACACATTTTGGCCAACAACTTTCAGTCTGAGAAGACCATTTCTC
TGCTGAGCTGTGCCACTCAGATGGTTTTCCTCATTGGACTTGGTAGTGCTGATTGCTTCCTCCTGGCTAT
CATGGCCTATGACAGATATGTTGCCATCTGTCATCCTTTGCAGTACCCTCTCATCATGACTATAACACTT
TGTGTTCGCTTGGTTGTGGCTTCTGTGGTCATTGGCTTGTTCCTGTCCTTACAGCTTGTGGTCTTTATCT
TCTGTCTACCATTCTGTCAGGACAGGGGAATAGAGCACTTCTTTTGTGATGCTCCACCACTGATGCGTCT
CGTGTGTGCCACAAGTCATATCCATGAGCTCTCTGTGCTAATGGCAGCCACACTAGCCATTGCTGTGCCT
TTCTTTTTCATTGCCACCACCTATGCCTTGATAGTGGCTGCTGTGCTCAAACTCCACTCAGCAGCTGGCC
GTCACAGGGCCTTCAACACTTGTTCTTCCCACCTCACTGTGGTATTGTTGCAGTATGGCTGCTGTGCCTT
CATGTACTTGCGCCCCGTCTCCAGTTACCATCCCAAGCAAGATCAGTTTGTCTCCCTGGTATACACACTG
GGTACACCATTCCTCAATCCCCTCATCTACACTCTGAGGAACAGTGAGATGAAAGGGGCCATAGGAAAAG
TGCTTACCAGAAAGTATCTTTCATGGAAAATGATAGGATAG

Translation (316 aa):
MTWKNHSLFMEFVFLAYPKRPELRMLCFFGVSLAYGLIISGNILIVVSIQTETRLHTPMYYFLGSLSGIE
LCYTAVVVPHILANNFQSEKTISLLSCATQMVFLIGLGSADCFLLAIMAYDRYVAICHPLQYPLIMTITL
CVRLVVASVVIGLFLSLQLVVFIFCLPFCQDRGIEHFFCDAPPLMRLVCATSHIHELSVLMAATLAIAVP
FFFIATTYALIVAAVLKLHSAAGRHRAFNTCSSHLTVVLLQYGCCAFMYLRPVSSYHPKQDQFVSLVYTL
GTPFLNPLIYTLRNSEMKGAIGKVLTRKYLSWKMIG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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