NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29654.1 Public Mus musculus 19 Or5b109 23 108 98 CCDS HistoryNCBI Gene:258120Re-query CCDS DB by CCDS ID:29654.1Re-query CCDS DB by GeneID:258120See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064102.1 ENSMUSP00000070872.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064102.1Link to Ensembl Protein Viewer:ENSMUSP00000070872.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000064102Re-query CCDS DB by Protein ID:ENSMUSP00000070872
Original member Current member EBI ENSMUST00000207246.3 ENSMUSP00000146566.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207246.3Link to Ensembl Protein Viewer:ENSMUSP00000146566.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207246Re-query CCDS DB by Protein ID:ENSMUSP00000146566
Original member Current member NCBI NM_001011840.1 NP_001011840.1 Accepted alive Link to Nucleotide Sequence:NM_001011840.1Link to Protein Sequence:NP_001011840.1Re-query CCDS DB by Nucleotide ID:NM_001011840Re-query CCDS DB by Protein ID:NP_001011840Link to BLAST:NP_001011840.1

Chromosomal Locations for CCDS 29654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13234252 13235184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGACACCATTGAAAAACTGGACAGAAGTGACACACTTTCTCCTGCTGGGACTTACTGATGATCCAGGAC
TGCAGCTTCCCCTCTTCATCATTTTTCTCCTCATCTACATTTTCACCCTGGTAGGGAACCTGGGGTTGAT
TCTGCTGATTCTTTTGGACTCTCGGCTCCACACTCCCATGTACTTTTTTCTTGGTAACTTGTCTCTAGTT
GATGTTTTTTACTCTTCAGCTATCACACCAAAAGTCATGGCTGGGCTTCTATTGGGAGACAAGATCATAT
CCTACAATAGCTGTGCTGCTCAGATGTTTGTTTTTGCAACCTTTGCTACTGTGGAAAATTACCTGTTGGC
CTCAATGGCCTATGATCGCTATGCAGCAGTATGTAAACCCTTACACTATGCTACTACCATGACTCCAAGT
GTATGTATGTGTCTGATCATGGGCTGCTATGTTCTTGGTTTTTTGAGTGTCTCAGTTTACCTTGGAGATA
CATTTAGTCTCTCTTTCTGTAAGTCTAATGTGGTCCATCATTTTTTTTGTGACATGCCAGCACTCATGGC
TCTCTCTTGCTCGGATAGGCATATCAATGAGCTAGTACTTATTTATCTAGCCAGCTTCACTCTCTTCTTT
GCTCTCATAATAATATTAGTATCATATACTATAATTTTTATCACAATCTTAAACATGCACACAGGAGCAG
GACTTCAGAAGGCTATTTCTACCTGTGCTTCCCACTTTATTGCTGTTTTTATTTTCTATGGAACAACAAT
CTTCATGTATTTGCAGCCAAGCTCTAGACATTCAATGGACACTGACAAAATTGTGTCTGTGTTCTATACC
ATGGTCATTCCCATGCTGAACCCTTTAGTTTACAGCCTGAGAAACAAAGAAGTCAAGAGTGCATTCATGA
AATGGATTCTGAAAGAAAAATAA

Translation (310 aa):
MTPLKNWTEVTHFLLLGLTDDPGLQLPLFIIFLLIYIFTLVGNLGLILLILLDSRLHTPMYFFLGNLSLV
DVFYSSAITPKVMAGLLLGDKIISYNSCAAQMFVFATFATVENYLLASMAYDRYAAVCKPLHYATTMTPS
VCMCLIMGCYVLGFLSVSVYLGDTFSLSFCKSNVVHHFFCDMPALMALSCSDRHINELVLIYLASFTLFF
ALIIILVSYTIIFITILNMHTGAGLQKAISTCASHFIAVFIFYGTTIFMYLQPSSRHSMDTDKIVSVFYT
MVIPMLNPLVYSLRNKEVKSAFMKWILKEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH