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Report for CCDS71050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71050.1 Public Mus musculus 2 Gtdc1 23 108 98 CCDS HistoryNCBI Gene:227835Re-query CCDS DB by CCDS ID:71050.1Re-query CCDS DB by GeneID:227835See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 71050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112810.7 ENSMUSP00000108429.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112810.7Link to Ensembl Protein Viewer:ENSMUSP00000108429.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112810Re-query CCDS DB by Protein ID:ENSMUSP00000108429
Original member Current member NCBI NM_001362986.1 NP_001349915.1 Accepted alive Link to Nucleotide Sequence:NM_001362986.1Link to Protein Sequence:NP_001349915.1Re-query CCDS DB by Nucleotide ID:NM_001362986Re-query CCDS DB by Protein ID:NP_001349915Link to BLAST:NP_001349915.1
Original member Current member NCBI NM_001362987.1 NP_001349916.1 Accepted alive Link to Nucleotide Sequence:NM_001362987.1Link to Protein Sequence:NP_001349916.1Re-query CCDS DB by Nucleotide ID:NM_001362987Re-query CCDS DB by Protein ID:NP_001349916Link to BLAST:NP_001349916.1
Original member Current member NCBI NM_172662.3 NP_766250.2 Accepted alive Link to Nucleotide Sequence:NM_172662.3Link to Protein Sequence:NP_766250.2Re-query CCDS DB by Nucleotide ID:NM_172662Re-query CCDS DB by Protein ID:NP_766250Link to BLAST:NP_766250.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349915.1 445 Q8BW56-1 445 100% 0 0
NP_001349916.1 445 Q8BW56-1 445 100% 0 0
NP_766250.2 445 Q8BW56-1 445 100% 0 0

Chromosomal Locations for CCDS 71050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 44565451 44565534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44570419 44570510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44571213 44571283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44575443 44575587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44591881 44591990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44635002 44635316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44752047 44752220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44756268 44756435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44825351 44825529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGAGTATTGTCATCATCGAGGCATTTTATGGAGGCTCCCATCGACAGCTGGTAGAGCTGCTCCGAGAAG
AATTAGATGACTGCGTGTTGTACACTCTTCCTGCAAAGAAATGGCACTGGAGAGCACGCACAGCAGCCTT
ATACTTCTCACAGAATATTCCCAGCAGTGAGCACTACAGGACCCTCTTTGCAAGCTCAGTACTCAACCTG
ACTGAACTGGCTGCCCTTCGGCCTGATCTGGGAAAACTGAAAAAGATCTTATACTTCCATGAAAACCAGT
TGGTGTATCCTGTCAAGAAATATCAGGAGAGAGATTTTCAATATGGATACAACCAAATTCTCTCGTGTTT
GGTGGCTGATGTTGTGGTATTCAATTCCAGTTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTC
CTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTTATTT
ATTTTCCCATCAGATTTCCTGATGTGAGCAGATTCATGCCCAAGCACAAAATAGCCCACTTAAGGAGGAT
GCTCAGCCTTATTGGAGATGCTGCTGCATCTCAGTCTGTGGCGCCTTGTCCCCAGCCAGGGCAGAGGGTT
TCTGAGAAGTCACCGGAGAACTGTGAATCAAAGTCTGATGAACACCCTGACCTTGATGCTGAACAAGAAG
CCCTGGACAACCCATCAGTCCATAAATCAGGCTCTCTTCCTGTGAGTAAAGAAAACCTGCCTCTTGATCC
CAGCACCCTTCTGTGTGGAGCTGAAGATCCGCAAAGACCGCTGCACATTACATGGCCGCACAGGTGGGAG
CATGACAAAGATCCAGAGACGTTCTTAAAGATACTAATGAGTCTAAAGCAGTTAAACTTGAACTTCCATG
TCTCTGTCCTCGGAGAGACTTTTACAGACACACCAGATATATTTTCAGAAGCCAAAAAGGCACTGGGCTC
TTCAGTCTTGCACTGGGGCTACTTACCCCGTAAAGAAGACTATTTCCGCGTACTGTGCATGGCTGACGTT
GTCATCTCAACAGCCAAGCATGAATTCTTTGGAGTAGCAATGTTGGAAGCTGTGTACTGTGGCTGCTACC
CACTCTGTCCCAAAGCCTTGGTCTATCCTGAGATCTTTCCAGCTGAGTATCTGTATTCCACACCTGAACA
GCTTTCAAAACGGCTCAAGAGTTTCTGCAAGAGGCCAGATATTATAAGAAAACATCTTTATAAGGGTGAA
GTGGCTCCATTTTCTTGGGCAGCCCTACATGGTAAATTCAGGTCTCTGCTCACAACAGAACCCAGGGAAG
ATTTGTGA

Translation (445 aa):
MSIVIIEAFYGGSHRQLVELLREELDDCVLYTLPAKKWHWRARTAALYFSQNIPSSEHYRTLFASSVLNL
TELAALRPDLGKLKKILYFHENQLVYPVKKYQERDFQYGYNQILSCLVADVVVFNSSFNMESFLTSIGKF
LKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMPKHKIAHLRRMLSLIGDAAASQSVAPCPQPGQRV
SEKSPENCESKSDEHPDLDAEQEALDNPSVHKSGSLPVSKENLPLDPSTLLCGAEDPQRPLHITWPHRWE
HDKDPETFLKILMSLKQLNLNFHVSVLGETFTDTPDIFSEAKKALGSSVLHWGYLPRKEDYFRVLCMADV
VISTAKHEFFGVAMLEAVYCGCYPLCPKALVYPEIFPAEYLYSTPEQLSKRLKSFCKRPDIIRKHLYKGE
VAPFSWAALHGKFRSLLTTEPREDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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