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Report for CCDS38554.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38554.2 Public Mus musculus 3 H3c14 23 108 98 CCDS HistoryNCBI Gene:15077Re-query CCDS DB by CCDS ID:38554.2Re-query CCDS DB by GeneID:15077See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 38554.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available conservation and histone protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 38554.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176059.1 ENSMUSP00000134751.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176059.1Link to Ensembl Protein Viewer:ENSMUSP00000134751.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176059Re-query CCDS DB by Protein ID:ENSMUSP00000134751
Original member Current member NCBI NM_178216.3 NP_835734.2 Accepted alive Link to Nucleotide Sequence:NM_178216.3Link to Protein Sequence:NP_835734.2Re-query CCDS DB by Nucleotide ID:NM_178216Re-query CCDS DB by Protein ID:NP_835734Link to BLAST:NP_835734.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835734.2 136 P84228 136 100% 0 0

Chromosomal Locations for CCDS 38554.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96246886 96247296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCCCGTACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCA
AGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGT
GGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGC
CTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGC
AGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACG
CGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAA

Translation (136 aa):
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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