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Report for CCDS71401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71401.1 Public Mus musculus 4 Slc31a2 23 108 98 CCDS HistoryNCBI Gene:20530Re-query CCDS DB by CCDS ID:71401.1Re-query CCDS DB by GeneID:20530See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107467.2 ENSMUSP00000103091.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107467.2Link to Ensembl Protein Viewer:ENSMUSP00000103091.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107467Re-query CCDS DB by Protein ID:ENSMUSP00000103091
Original member Current member EBI ENSMUST00000107468.7 ENSMUSP00000103092.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107468.7Link to Ensembl Protein Viewer:ENSMUSP00000103092.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107468Re-query CCDS DB by Protein ID:ENSMUSP00000103092
Original member Current member NCBI NM_001290518.1 NP_001277447.1 Accepted alive Link to Nucleotide Sequence:NM_001290518.1Link to Protein Sequence:NP_001277447.1Re-query CCDS DB by Nucleotide ID:NM_001290518Re-query CCDS DB by Protein ID:NP_001277447Link to BLAST:NP_001277447.1

Chromosomal Locations for CCDS 71401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62292632 62292698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62295887 62296076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62296975 62297143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGCATTTCATCTTCTCAGATGAGGCCGTGCTTCTCTTTGATTTCTGGAGGGTCCACAGCCCTACAGGCA
TGGCTCTCTCAGTGCTGGTAGTCTTGCTCCTGGCAGTACTGTATGAGGGCATCAAGGTTGGCAAAGCCAA
ATTGCTCCACAAGACTCTGGAGAGCCTGCCTGCCACCAACAGCCAGCAGTTCATCTTGGGACCAGACCAG
GATTCTACAGGCTCCAGATCAACTTCAGACAATAGGACCCGCCTCAGGTGGTTTTTGTGTTACTTTGGCC
AGTCCCTAGTCCATGTCATTCAGGTGGTAATTGGCTACTTTGTGATGCTGGCTGTCATGTCCTACAACAC
CTGGATTTTCCTCGGTGTGGTCCTGGGCTCGGCTGTGGGCTACTACCTAGCCTACCCACTTCTCAACATG
ACTTAG

Translation (141 aa):
MHFIFSDEAVLLFDFWRVHSPTGMALSVLVVLLLAVLYEGIKVGKAKLLHKTLESLPATNSQQFILGPDQ
DSTGSRSTSDNRTRLRWFLCYFGQSLVHVIQVVIGYFVMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLNM
T


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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