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Report for CCDS30041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30041.1 Public Mus musculus X Rp2 23 108 98 CCDS HistoryNCBI Gene:19889Re-query CCDS DB by CCDS ID:30041.1Re-query CCDS DB by GeneID:19889See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033372.12 ENSMUSP00000033372.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033372.12Link to Ensembl Protein Viewer:ENSMUSP00000033372.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033372Re-query CCDS DB by Protein ID:ENSMUSP00000033372
Original member Current member EBI ENSMUST00000115391.7 ENSMUSP00000111049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115391.7Link to Ensembl Protein Viewer:ENSMUSP00000111049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115391Re-query CCDS DB by Protein ID:ENSMUSP00000111049
Original member NCBI NM_001290643.1 NP_001277572.1 Updated not alive Link to Nucleotide Sequence:NM_001290643.1Link to Protein Sequence:NP_001277572.1Re-query CCDS DB by Nucleotide ID:NM_001290643Re-query CCDS DB by Protein ID:NP_001277572
Current member NCBI NM_001290643.2 NP_001277572.1 Accepted alive Link to Nucleotide Sequence:NM_001290643.2Link to Protein Sequence:NP_001277572.1Re-query CCDS DB by Nucleotide ID:NM_001290643Re-query CCDS DB by Protein ID:NP_001277572Link to BLAST:NP_001277572.1
Original member NCBI NM_133669.5 NP_598430.1 Updated not alive Link to Nucleotide Sequence:NM_133669.5Link to Protein Sequence:NP_598430.1Re-query CCDS DB by Nucleotide ID:NM_133669Re-query CCDS DB by Protein ID:NP_598430
Current member NCBI NM_133669.6 NP_598430.1 Accepted alive Link to Nucleotide Sequence:NM_133669.6Link to Protein Sequence:NP_598430.1Re-query CCDS DB by Nucleotide ID:NM_133669Re-query CCDS DB by Protein ID:NP_598430Link to BLAST:NP_598430.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277572.1 347 Q9EPK2-1 347 100% 0 0
NP_598430.1 347 Q9EPK2-1 347 100% 0 0

Chromosomal Locations for CCDS 30041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20364736 20364828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20376881 20377546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20381705 20381819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20397221 20397306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20397652 20397735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGGCTGCTGCTTCACTAAGAGGAGGAAGAGTGAAAAGGCTGAGGGAGAGGAGGAGCAGCCCAAGCTGT
ACAGCTGGGACCAGCGGGAGAAGGTTGATCCAAAAGATTACATGTTTAGTGGACTGAAGGATGAAACAGT
AGGTCGCTTACCTGGAAAAGTGGCAGGACAACAATTTGTCATTCAAGACTGTGAGAACTGTAACATCTAT
ATTTTTGACCACTCAGCTACTATTACCATTGATGACTGCACTAACTGTGTAATTTTTTTGGGACCAGTGA
AAGGCAGTGTCTTTTTCCGAAATTGTAGAGATTGCAAGTGCACATTGGCTTGCCAGCAATTTCGTGTGAG
AGACTGTAGAAAGTTGGAAGTCTTTTTGTGCTGTGCTACTCAACCCATTATTGAATCTTCCACAAACATC
AAGTTTGGCTGTTTTCAATGGTACTACCCTGAATTAGCAGCCCAATTCAAAGATGCAGGCCTCAGTATCT
TCAATAACATTTGGAGTCATGTTCATGATTTTACACCTGTGTCAGGAGAGCTCAACTGGAGCCTTCTTCC
AGAAAATGCCGTGGTTCAAGACTATGTTCCTATCCCAATGACTGAAGAATTCAAAGCTGTGCGAATTTCC
ACAGAAGCCAATAGAAGCATTGTTCCTGTGTCCCGGGGTCAGAGACAGAAGTACAGTGATGAATCATGTC
TTGTGGTATTATTTGCCGATGATTATACAACTGCAAATGCCAGGAAACTAATTGATGAGATGGTTGGTAA
AGGCTTCTCCCTAGTGCAGACAAAGGAAATGTCAATGAAAACTGAAGACGCCCAAAGGGTTTTCCAGGAA
AAGGCATCAGATTTTTTACTTCTTCTAAACAAAGGTCCTGTGATTGCCTTGGAATTTAATGGAGATGACG
CTGTACAAGAATGTCACCTTATTGTAAATGGGATGTTCAACGGGACAAAGATGTTTGTATCAGAAAAGAA
GGAGACCGCATCTGGAGATGTTGATAGCTTCTATAACTTTGCTGAGATCCAGATGGGGATATGA

Translation (347 aa):
MGCCFTKRRKSEKAEGEEEQPKLYSWDQREKVDPKDYMFSGLKDETVGRLPGKVAGQQFVIQDCENCNIY
IFDHSATITIDDCTNCVIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSTNI
KFGCFQWYYPELAAQFKDAGLSIFNNIWSHVHDFTPVSGELNWSLLPENAVVQDYVPIPMTEEFKAVRIS
TEANRSIVPVSRGQRQKYSDESCLVVLFADDYTTANARKLIDEMVGKGFSLVQTKEMSMKTEDAQRVFQE
KASDFLLLLNKGPVIALEFNGDDAVQECHLIVNGMFNGTKMFVSEKKETASGDVDSFYNFAEIQMGI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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