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Report for CCDS78757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78757.1 Public Mus musculus 1 Becn2 23 108 98 CCDS HistoryNCBI Gene:226720Re-query CCDS DB by CCDS ID:78757.1Re-query CCDS DB by GeneID:226720See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78757.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201297.1 ENSMUSP00000143887.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201297.1Link to Ensembl Protein Viewer:ENSMUSP00000143887.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201297Re-query CCDS DB by Protein ID:ENSMUSP00000143887
Original member Current member NCBI NM_001290692.1 NP_001277621.1 Accepted alive Link to Nucleotide Sequence:NM_001290692.1Link to Protein Sequence:NP_001277621.1Re-query CCDS DB by Nucleotide ID:NM_001290692Re-query CCDS DB by Protein ID:NP_001277621Link to BLAST:NP_001277621.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277621.1 447 P0DM65 447 100% 0 0

Chromosomal Locations for CCDS 78757.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175920370 175921688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175921797 175921821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGTCTCCTGCCCTCTTCCTGTGCCAGCGCTGCAAAGAACCCCTGAAACTCTTACAGCAGCAGGGGGGGC
CCTTGGAAGTCCAGCACCACGCCAATACCCCCACAGAAATTCCAGTTTCTGCAGAGTCCCAAGTCAGGAC
CTCCGGCAGACCCCACTCTGACGGTGGCAGGGTGTCCCAGGGAAGTGCCCTCTGCACTTTTACTCTGCTT
ACCTCTGGCGGACCGGACTCTGAAGGTGGCACGACGTCCCAGGGAAATGCCTGCTGTACCTTTACTCTGC
TTGGTGAATCTGCCTCCATGAGAACTATGAACACTATCCAAAATACTGTCTTAGAGACCTTCGAAATCCT
CTCCGACCAAAAGGTGGTGGACCACCCGCTGTGTGTGGACTGTACCGACCATCTTCTGATGCAACTAGAC
GACCAGCTCGCTCTCCTGGCATCTGACAACCAGAAGTACAAAAGTTTCCAGGACAGAGAGTTGCTGGTGA
GTGAGGAAGAGAGGGAGGCGCTACACGCGGAGCTTTGTGCCGAACTGTCCAGTCTGGAGCAGGAGGAAGC
AAGGCTGACCCAGGAGCTAGAGGATTTAGACGGCCATCATGCAAGGGTAGCCGCTGAACTCAGAGCAGCC
CAGGCCGAGAGCAAGGAGCTGTATAAACAGCATGAGCAGCACAGGGTCGAGTACTCTGTTTTCAAGATGG
AACAGCTGGAGCTGATGGACCAGCTGAGCAGTGTGGAGAACCAGCTGACGTATGCCCTGAGTCAGCAGTA
CCGCTTAAGACAGACCAATATCTTCAACGCCACATTTACCATTTCAGATGAGGGTCCCTTGGGCGTTATC
AACAATTTTAGGCTGGGCTGTCTCCCCGGGGTCCGGGTGGGCTGGACTGAGATCAGTTCTGCCTGGGGAC
AGACAGTCTTACTGCTCTTCAGCTTGTCCAAGATAGCTGGACTGCAATTCCAGAGATATCAACTGGTTCC
CTTTGGGGACCATTCCTATCTCAAGTCCTTGACTGGTGATGGCGTGCTGCCCTTATTCTCTGATGGGAGC
CACAGCGTCTTCTTGAATAACAAGTTTGACTGTGGGATGAAGGCCTTCCTGGACTGTCTTCAGCAGTTTG
TGGAGGAGATTGAGAGGGATGAGAGATGCCCCTGCCTGCCCTACAGGATCCATGTGAAGGAAGGGCTGAT
GGAGGATGTCTGGGACAGTGGGGAGTGCTGCTCCATCAGGACCCATCTGAACACGGAGGAGGAGTGGTCC
AGGGCTCTGAAATTCATGCTTTCGGACTTGAAGTTGATCCTTGCTTGGGCTTCCTTAAGGTTTTCCAGAG
TCCAGAGGCCTTAA

Translation (447 aa):
MSPALFLCQRCKEPLKLLQQQGGPLEVQHHANTPTEIPVSAESQVRTSGRPHSDGGRVSQGSALCTFTLL
TSGGPDSEGGTTSQGNACCTFTLLGESASMRTMNTIQNTVLETFEILSDQKVVDHPLCVDCTDHLLMQLD
DQLALLASDNQKYKSFQDRELLVSEEEREALHAELCAELSSLEQEEARLTQELEDLDGHHARVAAELRAA
QAESKELYKQHEQHRVEYSVFKMEQLELMDQLSSVENQLTYALSQQYRLRQTNIFNATFTISDEGPLGVI
NNFRLGCLPGVRVGWTEISSAWGQTVLLLFSLSKIAGLQFQRYQLVPFGDHSYLKSLTGDGVLPLFSDGS
HSVFLNNKFDCGMKAFLDCLQQFVEEIERDERCPCLPYRIHVKEGLMEDVWDSGECCSIRTHLNTEEEWS
RALKFMLSDLKLILAWASLRFSRVQRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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