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Report for CCDS71140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71140.1 Public Mus musculus 2 Nphp1 23 108 98 CCDS HistoryNCBI Gene:53885Re-query CCDS DB by CCDS ID:71140.1Re-query CCDS DB by GeneID:53885See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110357.1 ENSMUSP00000105986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110357.1Link to Ensembl Protein Viewer:ENSMUSP00000105986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110357Re-query CCDS DB by Protein ID:ENSMUSP00000105986
Original member Current member NCBI NM_001291012.1 NP_001277941.1 Accepted alive Link to Nucleotide Sequence:NM_001291012.1Link to Protein Sequence:NP_001277941.1Re-query CCDS DB by Nucleotide ID:NM_001291012Re-query CCDS DB by Protein ID:NP_001277941Link to BLAST:NP_001277941.1

Chromosomal Locations for CCDS 71140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127740916 127741188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127743072 127743116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127745896 127745969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127748000 127748112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127753973 127754072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127756092 127756168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127757679 127757761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127759576 127759686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127761162 127761236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127763779 127763907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127766024 127766118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127768171 127768258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127769615 127769657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127770259 127770392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127772101 127772202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127773898 127774099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127777269 127777393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127779104 127779164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127780063 127780136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127788786 127788854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGCTCGCCCGGCGGCCGCGGGACCCGCTGCAGGCGCTGAGGCGCCGCGGGCAGGAGCTGAAGCTGCAGG
TTGATAGTTTGGTGACTGAAAGCCAACTAACAGGTGCTCTGGAACCGAGTAAAAGGAGAGAGATTTACCA
AAGATGTATCCAGTTAAAACAGGCAGTAGATGAAAATAAAAACACCCTTCAAAAATTAAACAAAGCTGAT
GAAGCTGCACCTGTGGGGAACTATGAGCAGAGGAAGGAGGAGGAACACAGCCTTCTGGAGAAGCTAGCCT
GCCAGCTGCAGGAGCTTGCCGTGAGCATCAGCAGGAAAGACGCTCTCAAAGTTGAGGCACACAGTGACAA
GGAGGAAGATGACACGACTGAAGATGATGAAGAAGAAACTGGTGGAGAGGAAGAAGAGTCAGAAGGGGAT
GGAGAAGGAAAGCAAGAGCAAGCCTCCCCGAAACAAGCAGAAACAGAAACTGTCACATACATCGCTCTTG
GGGACTTCGCTGCTCAGCAGACTGGGGACTTGACCTTTAAGAAAGGGGACGTTCTCCATATAATTGAAAA
GAAGCCTGATGGTTGGTGGCTGGCTAAGGATGCTGAAGGAGTTGAGGGTCTCATTCCCAGGACCTACTTG
GAGCCCTATAATAAAGAAGACAAGCTGGAGTCAAGCGAAGGCAGCGAGGAGGGCGGTGAGGAGGACGGTG
AGGAGGACGGTGAGGAGGACGTGGAGGTGGTGGATGAAACTGCAGATGGAGCCCAGGTGAAGCAGAGAAC
TGATTCCCACTGGAGTGCTGTACGAAAAGCTATCTCAGAGCAGATAAATACCGTTGATGTGTTAGCCACA
ATGGGAGCCATTCCTGCAGGATTCCGGCCTTCCACGCTCTCCCAGCTGCTGGATGAAGGGAACCAGTTTC
GAGCAAGTTACTTCTTGCAGCCAGAGCTCACGACATCGCAGCTGGCCTTCAGAGATCTAACATGGGATGC
TAAGGCAGGCACGATCATGTCGAGACCAAGTCGTGTTTCATTGATTCTGACCCTATGGAGCTGTAAAATG
ATCCCTCTCCCAGGAACAAGCATACAGGTTCTCAGCAGACACATCCGCCTCTGCCTGTTTGACGGCAGCA
AGGTCCTGAGTAATATCCATACAGTTCGAGCCGTGTGGCAGCCTAAGAAGCCAAAAACATGGACCTTCTC
TCCTCAGGTCACTGGCATCTTGCCATGCTTGCTCGATGGTGACTGTTTTATCAGGTCCAATTCTTCAACT
CCAGACCTTGGGATATTATTTGAACTTGGAATTTCTTACATTCGCAATTCAACTGGTGAGAGAGGAGAGT
TAAGCTGTGGCTGGGTGTTTCTTAAGCTTTTCGATGCCAGTGGAGTTCCTATTCCAGCAAAAACATACGA
ACTCTTCTTGAATGGCGGCACTCCTTACGAAAAAGGTGTTGAAGTGGACCCTTCAGTGTCCAGAAGAGCA
CAGGGCAGTGTTTTCCGTCAGATGATAAGTGTGCGCAGGCAGCCTCAACTTCTGGTGAAACTTCGGTCTC
TGAACAGGAGGTCCAGGGCCATGCTCAGTCTGCTGCCAGAAACCCTGGTGGGGAGTATGTGCTCTGCTCA
CTTACTGATATTTTACCGACAAATTCTTGGAGATGTGCTCCTGAGAGACAGGACAAACCTGCAAAGTGCC
GATTTAATCAGTCATCCCGTGCTGGCCACCTTCCCTCTGCTCCTGGAGCAGCCCGACGTGATGGATGCTC
TCAGGAGTTCCTGGTCTGAGAAAGAAAGTACACTAAAGCGAGCAGAGAAGAGAGACAAAGAGCTCCTAAA
GGCTGAGTTCCTCCTGGTCTACCATGACTGCGTGCTCCCTCTTCTGCACTCGACACTGCTGCCCCCCTTT
AGGTGGGCCGAGGAAGAGACAGAGGCTGCAAGATGGAAAGCCATTGCTGACTTCCTCAAGCAGAGCCGGG
AGAACGAGGGTTCCCTGAAGGCTCTGCTGTCACCAGATGGAGTTCACAAACCATTTGACCTTTCGGAGCA
GACCTTTGACTTCTTGGGTGAAATAAGAAAGAACTCAGGCTAA

Translation (690 aa):
MLARRPRDPLQALRRRGQELKLQVDSLVTESQLTGALEPSKRREIYQRCIQLKQAVDENKNTLQKLNKAD
EAAPVGNYEQRKEEEHSLLEKLACQLQELAVSISRKDALKVEAHSDKEEDDTTEDDEEETGGEEEESEGD
GEGKQEQASPKQAETETVTYIALGDFAAQQTGDLTFKKGDVLHIIEKKPDGWWLAKDAEGVEGLIPRTYL
EPYNKEDKLESSEGSEEGGEEDGEEDGEEDVEVVDETADGAQVKQRTDSHWSAVRKAISEQINTVDVLAT
MGAIPAGFRPSTLSQLLDEGNQFRASYFLQPELTTSQLAFRDLTWDAKAGTIMSRPSRVSLILTLWSCKM
IPLPGTSIQVLSRHIRLCLFDGSKVLSNIHTVRAVWQPKKPKTWTFSPQVTGILPCLLDGDCFIRSNSST
PDLGILFELGISYIRNSTGERGELSCGWVFLKLFDASGVPIPAKTYELFLNGGTPYEKGVEVDPSVSRRA
QGSVFRQMISVRRQPQLLVKLRSLNRRSRAMLSLLPETLVGSMCSAHLLIFYRQILGDVLLRDRTNLQSA
DLISHPVLATFPLLLEQPDVMDALRSSWSEKESTLKRAEKRDKELLKAEFLLVYHDCVLPLLHSTLLPPF
RWAEEETEAARWKAIADFLKQSRENEGSLKALLSPDGVHKPFDLSEQTFDFLGEIRKNSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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