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Report for CCDS80729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80729.1 Public Mus musculus 7 Gtf2h1 23 108 98 CCDS HistoryNCBI Gene:14884Re-query CCDS DB by CCDS ID:80729.1Re-query CCDS DB by GeneID:14884See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107644.1 ENSMUSP00000103271.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107644.1Link to Ensembl Protein Viewer:ENSMUSP00000103271.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107644Re-query CCDS DB by Protein ID:ENSMUSP00000103271
Original member Current member NCBI NM_001291075.1 NP_001278004.1 Accepted alive Link to Nucleotide Sequence:NM_001291075.1Link to Protein Sequence:NP_001278004.1Re-query CCDS DB by Nucleotide ID:NM_001291075Re-query CCDS DB by Protein ID:NP_001278004Link to BLAST:NP_001278004.1
Original member Current member NCBI NM_001360076.1 NP_001347005.1 Accepted alive Link to Nucleotide Sequence:NM_001360076.1Link to Protein Sequence:NP_001347005.1Re-query CCDS DB by Nucleotide ID:NM_001360076Re-query CCDS DB by Protein ID:NP_001347005Link to BLAST:NP_001347005.1

Chromosomal Locations for CCDS 80729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46797463 46797465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46801672 46801840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46803817 46804009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46804961 46805123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46806736 46806829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46808537 46808686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46808800 46808879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46812432 46812559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46812662 46812749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46814116 46814204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46815300 46815417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46816384 46816474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46816897 46817012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46819122 46819214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46822823 46822909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGCACCTTATAGCCATCATGGCGACTTCATCAGAAGAAGTGTTGCTGATTGTGAAGAAGGTTCGTCAGA
AGAAGCAGGATGGAGCACTGTACCTCATGGCAGAGAGAATTGCTTGGGCACCTGAAGGCAAAGACAGATT
TACAATCAGCCATATGTATGCAGATATTAAATGCCAGAAAATCAGTCCAGAGGGAAAAGCTAAAATACAA
CTTCAGCTGGTCCTGCATGCAGGGGACACAACAAACTTCCATTTTTCCAACGAAAGCACGGCAGTGAAAG
AACGGGATGCAGTGAAGGACCTCCTTCAGCAGCTGCTGCCCAAGTTCAAGCGGAAAGCTAATAAAGAGCT
GGAGGAGAAGAACAGAATGCTCCAAGAAGATCCTGTTTTATTCCAACTCTATAAAGACCTTGTTGTGAGC
CAAGTGATCAGTGCTGAGGAATTCTGGGCCAATCGTTTAAATGTGAATGCAACAGATAGTTCTACATCCA
GTCACAAGCAGGATGTTGGTATTTCTGCAGCATTTCTGGCTGATGTCCGGCCCCAAACGGATGGCTGTAA
TGGTCTGAGATATAATTTAACTTCTGATATCATTGAATCTATATTTAGGACCTATCCAGCAGTAAAAATG
AAATATGCAGAAACTGTACCACACAACATGACAGAAAAGGAGTTCTGGACACGCTTTTTCCAGTCCCATT
ATTTTCACAGGGACCGACTAAATACAGGATCGAAGGACCTCTTTGCAGAATGTGCCAAAATAGATGAGAA
GGGATTAAAAACAATGGTTTCATTAGGAGTGAAAAACCCAATGCTAGATTTGACATCGTTGGAAGATAAG
CCATTAGACGAGGGCTATGGCATTTCCTCTGTGCCATCTACTTCCAATTCCAAATCCATAAAGGAGAATA
GTAATGCTGCCATCATCAAAAGGTTTAACCACCACAGTGCCATGGTCCTGGCTGCTGGTCTCAGGAAACA
ACAAGCACAAAATGGACAGAATGGTGAGCCCAGCAGCGTGGATGGGAATTCTGGGGATACAGACTGCTTT
CAGCCAGCAGTCAAAAGGGCAAAGTTGCAGGAGTCCATTGAATATGAAGACTTGGGAAACAACAATTCTG
TGAAAACGATTGCACTGAATCTCAAGAAGTCAGACAGGTATTACCATGGTCCTACTCCAATTCAGTCACT
GCAGTATGCAACAAGTCAGGACATTATTAACTCTTTTCAAAGTATTAGACAAGAAATGGAAGCTTACACA
CCCAAGTTAACTCAGGTTCTCTCAAGCAGTGCTGCTAGTAGCACCATCACAGCCCTGTCACCTGGAGGAG
CTCTTATGCAGGGAGGGACACAGCAAGCCGTAAACCAGATGGTGCCAAACGATATTCAGTCTGAATTGAA
ACACTTGTATGTGGCTGTTGGGGAACTTCTGCGGCATTTTTGGTCTTGCTTTCCTGTTAATACACCATTC
CTAGAAGAAAAGGTAGTGAAAATGAAGAGTAATTTGGAACGGTTCCAAGTTACAAAGCTCTGCCCATTCC
AAGAAAAGATTCGGAGGCAGTATTTAAGCACAAATCTGGTAAGTCACATAGAAGAGATGCTGCAGACAGC
CTACAACAAGCTCCACGCGTGGCAATCCCGGCGCCTGATGAAGAAGACGTGA

Translation (553 aa):
MHLIAIMATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQ
LQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQEDPVLFQLYKDLVVS
QVISAEEFWANRLNVNATDSSTSSHKQDVGISAAFLADVRPQTDGCNGLRYNLTSDIIESIFRTYPAVKM
KYAETVPHNMTEKEFWTRFFQSHYFHRDRLNTGSKDLFAECAKIDEKGLKTMVSLGVKNPMLDLTSLEDK
PLDEGYGISSVPSTSNSKSIKENSNAAIIKRFNHHSAMVLAAGLRKQQAQNGQNGEPSSVDGNSGDTDCF
QPAVKRAKLQESIEYEDLGNNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYT
PKLTQVLSSSAASSTITALSPGGALMQGGTQQAVNQMVPNDIQSELKHLYVAVGELLRHFWSCFPVNTPF
LEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHAWQSRRLMKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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