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Report for CCDS1376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1376.1 Public Homo sapiens 1 RGS13 24 110 108 CCDS HistoryNCBI Gene:6003Re-query CCDS DB by CCDS ID:1376.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391995.7 ENSP00000375853.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391995.7Link to Ensembl Protein Viewer:ENSP00000375853.2Re-query CCDS DB by Nucleotide ID:ENST00000391995Re-query CCDS DB by Protein ID:ENSP00000375853
Original member Current member EBI ENST00000543215.5 ENSP00000442837.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543215.5Link to Ensembl Protein Viewer:ENSP00000442837.1Re-query CCDS DB by Nucleotide ID:ENST00000543215Re-query CCDS DB by Protein ID:ENSP00000442837
Original member Current member NCBI NM_002927.5 NP_002918.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002927.5Link to Protein Sequence:NP_002918.1Re-query CCDS DB by Nucleotide ID:NM_002927Re-query CCDS DB by Protein ID:NP_002918Link to BLAST:NP_002918.1
Original member Current member NCBI NM_144766.3 NP_658912.1 Accepted alive Link to Nucleotide Sequence:NM_144766.3Link to Protein Sequence:NP_658912.1Re-query CCDS DB by Nucleotide ID:NM_144766Re-query CCDS DB by Protein ID:NP_658912Link to BLAST:NP_658912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002918.1 159 O14921 159 100% 0 0
NP_658912.1 159 O14921 159 100% 0 0

Chromosomal Locations for CCDS 1376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 192644335 192644399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192647926 192647987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192658201 192658367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192659338 192659523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGAGCAGGCGGAATTGTTGGATTTGTAAGATGTGCAGAGATGAATCTAAGAGGCCCCCTTCAAACCTTA
CTTTGGAGGAAGTATTACAGTGGGCCCAGTCTTTTGAAAATTTAATGGCTACAAAATATGGTCCAGTAGT
CTATGCAGCATATTTAAAAATGGAGCACAGTGACGAGAATATTCAATTCTGGATGGCATGTGAAACCTAT
AAGAAAATTGCCTCACGGTGGAGCAGAATTTCTAGGGCAAAGAAGCTTTATAAGATTTACATCCAGCCAC
AGTCCCCTAGAGAGATTAACATTGACAGTTCGACAAGAGAGACTATCATCAGGAACATTCAGGAACCCAC
TGAAACATGTTTTGAAGAAGCTCAGAAAATAGTCTATATGCATATGGAAAGGGATTCCTACCCCAGATTT
CTAAAGTCAGAAATGTACCAAAAACTTTTGAAAACTATGCAGTCCAACAACAGTTTCTGA

Translation (159 aa):
MSRRNCWICKMCRDESKRPPSNLTLEEVLQWAQSFENLMATKYGPVVYAAYLKMEHSDENIQFWMACETY
KKIASRWSRISRAKKLYKIYIQPQSPREINIDSSTRETIIRNIQEPTETCFEEAQKIVYMHMERDSYPRF
LKSEMYQKLLKTMQSNNSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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