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Report for CCDS29409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29409.1 Public Mus musculus 19 Doc2g 23 108 98 CCDS HistoryNCBI Gene:60425Re-query CCDS DB by CCDS ID:29409.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025806.4 ENSMUSP00000025806.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025806.4Link to Ensembl Protein Viewer:ENSMUSP00000025806.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025806Re-query CCDS DB by Protein ID:ENSMUSP00000025806
Original member Current member NCBI NM_021791.3 NP_068563.2 Accepted alive Link to Nucleotide Sequence:NM_021791.3Link to Protein Sequence:NP_068563.2Re-query CCDS DB by Nucleotide ID:NM_021791Re-query CCDS DB by Protein ID:NP_068563Link to BLAST:NP_068563.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068563.2 387 Q9ESN1 387 99.2248% 0 3

Chromosomal Locations for CCDS 29409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4003571 4003814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4003945 4004024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4004096 4004167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4004323 4004432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4004513 4004648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4004763 4004816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4006110 4006267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4006358 4006439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4006552 4006648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4006719 4006849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGCATGTGCAGGGCCAGCCAGTGGGCGACAGCGGGTGAGCATGCAGGAACACATGGCCATCGATGTGA
GCCCTGGCCCCATTCGGCCCATCCGCCTCATTTCCAACTACTTCCCACATTTCTACCCCTTCTTGGAGCC
GGTGCTGCGTGCCCCAGATCGGCAGGCAATGCTGGCCCCAGCCATCCCCTCTGCACCCCAGCTGCAGCCC
AACCCTGAGCCCGAAGGAGACTCGGATGACAGCACTGCCCTAGGCACCCTAGAATTCACACTTCTCTTTG
ATGAGGACAACAGCGCCCTGCACTGCACAGCCCATCGTGCAAAGGGTCTCAAGCCACCAGCCGCCGGCTC
TGTGGACACCTATGTCAAAGCCAACTTACTACCAGGGGCCAGCAAGGCCAGCCAGCTTCGGACACGCACT
GTTCGAGGCACCAGGGAACCTGTCTGGGAGGAGACTCTCACCTATCATGGCTTTACATGCCAGGATGCTG
GACGGAAGACCCTGAGACTATGTGTGTGTGAGGACTCACGGCTGCGGCGCCGGCGGCGAGGACCCCCCCT
GGGGGAGCTACGAGTGCCCCTGAGGAAGCTGGTGCCAAACCGAGCCAGGAGCTTTGACATCTGTCTAGAG
AAGCGGAAGCTGACCAAGAGGCCCAAGAGCCTGGACACAGCTCGTGGCATGTCTCTATATGAGGAGGAGG
AGATGGAGGCAGAGGTGTTTGGGGAGGAGCGTGGCCGCATCCTACTGTCCCTGTGCTACAGTTCCGAGCG
CGGTGGCCTGCTGGTGGGTGTGCTACGCTGTGTTCACCTTGCTCCCATGGATGCCAATGGCTACTCAGAC
CCCTTTGTCCGCCTGTTCCTGCATCCAAGTTCTGGGAAGAAATCCAAATATAAGACCAGTGTTCGGAGGA
AGACCCTGAACCCTGAGTTCAATGAGGAATTCTTTTATGCAGGTCATCGGGAGGAGCTAGCCCAGAAGGC
ACTGCTGGTGTCTGTGTGGGACTATGACCTGGGCACAGCTGATGATTTCATTGGTGGGGTGCAGCTGAGT
GGCAGAGCCAGTGGGGAACGCCTGCGCCACTGGCGGGAGTGCTTAGGCCACTGTGACCACCGGCTGGAAC
TGTGGCACCTGCTGGACAGCGTGCCCCCCCAACTTGGTGACTAG

Translation (387 aa):
MACAGPASGRQRVSMQEHMAIDVSPGPIRPIRLISNYFPHFYPFLEPVLRAPDRQAMLAPAIPSAPQLQP
NPEPEGDSDDSTALGTLEFTLLFDEDNSALHCTAHRAKGLKPPAAGSVDTYVKANLLPGASKASQLRTRT
VRGTREPVWEETLTYHGFTCQDAGRKTLRLCVCEDSRLRRRRRGPPLGELRVPLRKLVPNRARSFDICLE
KRKLTKRPKSLDTARGMSLYEEEEMEAEVFGEERGRILLSLCYSSERGGLLVGVLRCVHLAPMDANGYSD
PFVRLFLHPSSGKKSKYKTSVRRKTLNPEFNEEFFYAGHREELAQKALLVSVWDYDLGTADDFIGGVQLS
GRASGERLRHWRECLGHCDHRLELWHLLDSVPPQLGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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