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Report for CCDS4460.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4460.2 Public Homo sapiens 5 BTNL9 24 110 108 CCDS HistoryNCBI Gene:153579Re-query CCDS DB by CCDS ID:4460.2Re-query CCDS DB by GeneID:153579See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4460.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327705.14 ENSP00000330200.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327705.14Link to Ensembl Protein Viewer:ENSP00000330200.9Re-query CCDS DB by Nucleotide ID:ENST00000327705Re-query CCDS DB by Protein ID:ENSP00000330200
Original member Current member NCBI NM_152547.5 NP_689760.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152547.5Link to Protein Sequence:NP_689760.2Re-query CCDS DB by Nucleotide ID:NM_152547Re-query CCDS DB by Protein ID:NP_689760Link to BLAST:NP_689760.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689760.2 535 Q6UXG8-1 535 100% 0 0

Chromosomal Locations for CCDS 4460.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 181045490 181045598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181047927 181048271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181050088 181050369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181053200 181053316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181053469 181053501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181054239 181054259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181055433 181055453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181055989 181056015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181058352 181058378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181059237 181059862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGTGGACCTCTCAGTCTCCCCAGACTCCTTGAAGCCAGTATCGCTGACCAGCAGTCTTGTCTTCCTCA
TGCACCTCCTCCTCCTTCAGCCTGGGGAGCCGAGCTCAGAGGTCAAGGTGCTAGGCCCTGAGTATCCCAT
CCTGGCCCTCGTCGGGGAGGAGGTGGAGTTCCCGTGCCACCTATGGCCACAGCTGGATGCCCAGCAAATG
GAGATCCGCTGGTTCCGGAGTCAGACCTTCAATGTGGTACACCTGTACCAGGAGCAGCAGGAGCTCCCTG
GCAGGCAGATGCCGGCGTTCCGGAACAGGACCAAGTTGGTCAAGGACGACATCGCCTATGGCAGCGTGGT
CCTGCAGCTTCACAGCATCATCCCCTCTGACAAGGGCACATATGGCTGCCGCTTCCACTCCGACAACTTC
TCTGGCGAAGCTCTCTGGGAACTGGAGGTAGCAGGGCTGGGCTCAGACCCTCACCTCTCCCTTGAGGGCT
TCAAGGAAGGAGGCATTCAGCTGAGGCTCAGATCCAGTGGCTGGTACCCCAAGCCTAAGGTTCAGTGGAG
AGACCACCAGGGACAGTGCCTGCCTCCAGAGTTTGAAGCCATCGTCTGGGATGCCCAGGACCTGTTCAGT
CTGGAAACATCTGTGGTTGTCCGAGCGGGAGCCCTCAGCAATGTGTCCGTCTCCATCCAGAATCTCCTCT
TGAGCCAGAAGAAAGAGTTGGTGGTCCAGATAGCAGACGTGTTCGTACCCGGAGCCTCTGCGTGGAAGAG
CGCGTTCGTCGCGACCCTGCCGCTGCTGTTGGTCCTCGCGGCGCTGGCGCTGGGCGTCCTCCGGAAGCAG
CGGAGAAGCCGAGAAAAGCTGAGGAAGCAGGCGGAGAAGAGACAAGAGAAACTCACTGCAGAGCTGGAAA
AGCTTCAGACAGAGCTTGACTGGAGACGGGCTGAAGGCCAGGCTGAGTGGAGAGCAGCCCAAAAATATGC
AGTGGATGTGACGCTGGACCCGGCCTCGGCGCACCCCAGCCTGGAGGTGTCGGAGGATGGCAAGAGCGTG
TCTTCCCGCGGGGCGCCGCCAGGCCCGGCGCCTGGCCACCCGCAGCGGTTCTCGGAGCAGACGTGCGCGC
TGAGCCTGGAGCGGTTCTCCGCCGGCCGCCACTACTGGGAGGTGCACGTGGGCCGCCGCAGCCGCTGGTT
CCTGGGCGCCTGCCTGGCCGCGGTGCCGCGCGCGGGGCCTGCGCGCCTGAGCCCTGCGGCCGGCTACTGG
GTGCTGGGGCTGTGGAACGGCTGCGAGTACTTCGTCCTGGCCCCGCACCGCGTCGCGCTCACCCTGCGCG
TGCCCCCGCGGCGCCTGGGCGTCTTCCTGGACTACGAGGCCGGAGAGCTGTCCTTCTTCAACGTGTCCGA
CGGCTCCCACATCTTCACCTTCCACGACACCTTCTCGGGCGCGCTCTGTGCGTACTTCAGGCCCAGGGCC
CACGACGGCGGCGAACATCCGGATCCCCTGACCATCTGCCCGCTGCCGGTTAGAGGGACGGGCGTCCCCG
AAGAGAACGACAGTGACACCTGGCTACAGCCCTATGAGCCCGCGGACCCCGCCCTGGACTGGTGGTGA

Translation (535 aa):
MVDLSVSPDSLKPVSLTSSLVFLMHLLLLQPGEPSSEVKVLGPEYPILALVGEEVEFPCHLWPQLDAQQM
EIRWFRSQTFNVVHLYQEQQELPGRQMPAFRNRTKLVKDDIAYGSVVLQLHSIIPSDKGTYGCRFHSDNF
SGEALWELEVAGLGSDPHLSLEGFKEGGIQLRLRSSGWYPKPKVQWRDHQGQCLPPEFEAIVWDAQDLFS
LETSVVVRAGALSNVSVSIQNLLLSQKKELVVQIADVFVPGASAWKSAFVATLPLLLVLAALALGVLRKQ
RRSREKLRKQAEKRQEKLTAELEKLQTELDWRRAEGQAEWRAAQKYAVDVTLDPASAHPSLEVSEDGKSV
SSRGAPPGPAPGHPQRFSEQTCALSLERFSAGRHYWEVHVGRRSRWFLGACLAAVPRAGPARLSPAAGYW
VLGLWNGCEYFVLAPHRVALTLRVPPRRLGVFLDYEAGELSFFNVSDGSHIFTFHDTFSGALCAYFRPRA
HDGGEHPDPLTICPLPVRGTGVPEENDSDTWLQPYEPADPALDWW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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