NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20976.1 Public Mus musculus 7 Gsk3a 23 108 98 CCDS HistoryNCBI Gene:606496Re-query CCDS DB by CCDS ID:20976.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071739.11 ENSMUSP00000071654.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071739.11Link to Ensembl Protein Viewer:ENSMUSP00000071654.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071739Re-query CCDS DB by Protein ID:ENSMUSP00000071654
Original member Current member NCBI NM_001031667.1 NP_001026837.1 Accepted alive Link to Nucleotide Sequence:NM_001031667.1Link to Protein Sequence:NP_001026837.1Re-query CCDS DB by Nucleotide ID:NM_001031667Re-query CCDS DB by Protein ID:NP_001026837Link to BLAST:NP_001026837.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026837.1 490 Q2NL51 490 100% 0 0

Chromosomal Locations for CCDS 20976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25228854 25228930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25229465 25229572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25229851 25230040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25230605 25230700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25230785 25230882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25231635 25231741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25231834 25231964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25233574 25233684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25233828 25233911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25235553 25235740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25237378 25237660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGAGCGGCGGCGGGCCTTCGGGAGGCGGCCCTGGGGGCTCGGGCCGGGCGCGGACCAGCTCGTTCGCGG
AGCCAGGAGGCGGAGGCGGAGGTGGTGGCGGCGGCCCCGGGGGCTCGGCCTCTGGCCCAGGAGGCACTGG
CGGCGGGAAAGCGTCAGTCGGGGCTATGGGTGGGGGCGTGGGAGCCTCGAGCTCCGGGGGTGGCCCCAGC
GGCAGCGGCGGAGGAGGCAGCGGTGGCCCCGGCGCGGGCACTAGCTTCCCGCCGCCGGGAGTGAAGCTGG
GCCGTGACAGCGGGAAGGTGACCACAGTGGTAGCCACTGTAGGCCAAGGCCCAGAGCGTTCCCAAGAAGT
GGCTTACACTGACATCAAAGTGATTGGTAATGGCTCATTCGGAGTAGTATACCAGGCACGGCTGGCAGAG
ACGAGGGAACTGGTGGCCATCAAGAAGGTTCTTCAGGACAAAAGGTTCAAGAACCGAGAACTGCAGATTA
TGCGTAAGCTGGACCACTGCAATATTGTGAGGCTGCGGTACTTTTTCTACTCCAGTGGGGAGAAGAAGGA
CGAGCTGTATTTGAATCTGGTGCTGGAGTATGTGCCCGAGACGGTGTACCGAGTGGCCCGCCACTTCACC
AAGGCCAAGCTGATCACCCCTATCATCTACATCAAGGTGTACATGTACCAGCTCTTCCGGAGCTTGGCCT
ACATCCACTCCCAAGGTGTGTGTCACCGTGACATCAAGCCCCAGAATTTGCTTGTGGACCCTGACACTGC
TGTCCTCAAGCTCTGCGATTTTGGCAGTGCAAAGCAGCTGGTTCGGGGGGAGCCCAATGTGTCCTACATC
TGCTCTCGGTACTACCGTGCTCCAGAACTCATCTTTGGAGCCACAGATTACACCTCGTCCATCGATGTGT
GGTCGGCTGGCTGTGTACTTGCTGAGCTACTTCTCGGCCAGCCCATCTTCCCTGGGGACAGTGGGGTGGA
CCAGCTTGTGGAGATCATCAAGGTACTAGGAACGCCAACCAGGGAACAAATCCGAGAGATGAACCCTAAC
TATACGGAGTTCAAGTTCCCCCAGATCAAAGCTCACCCTTGGACAAAGGTGTTCAAATCTTCAAAGACAC
CACCTGAGGCCATTGCACTCTGCTCTAGCCTACTGGAGTACACGCCATCCTCAAGGCTCTCCCCACTCGA
GGCTTGTGCCCACAGCTTCTTCGATGAACTGCGGAGACTCGGAGCCCAGCTCCCCAACGACCGCCCGCTT
CCCCCCCTGTTCAACTTCAGTCCTGGTGAACTGTCCATCCAACCATCTCTCAATGCCATTCTCATCCCTC
CTCACTTGAGGTCCCCAGCAGGCCCTGCTTCTCCCCTCACCACTTCCTACAACCCATCCTCACAAGCTTT
AACTGAAGCTCAGACTGGCCAAGATTGGCAGCCATCTGATGCCACAACTGCTACCCTCGCTAGCTCTTCC
TGA

Translation (490 aa):
MSGGGPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGASSSGGGPS
GSGGGGSGGPGAGTSFPPPGVKLGRDSGKVTTVVATVGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAE
TRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLVLEYVPETVYRVARHFT
KAKLITPIIYIKVYMYQLFRSLAYIHSQGVCHRDIKPQNLLVDPDTAVLKLCDFGSAKQLVRGEPNVSYI
CSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPN
YTEFKFPQIKAHPWTKVFKSSKTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRRLGAQLPNDRPL
PPLFNFSPGELSIQPSLNAILIPPHLRSPAGPASPLTTSYNPSSQALTEAQTGQDWQPSDATTATLASSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH