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Report for CCDS5440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5440.1 Public Homo sapiens 7 RP9 24 110 108 CCDS HistoryNCBI Gene:6100Re-query CCDS DB by CCDS ID:5440.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297157.8 ENSP00000297157.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297157.8Link to Ensembl Protein Viewer:ENSP00000297157.3Re-query CCDS DB by Nucleotide ID:ENST00000297157Re-query CCDS DB by Protein ID:ENSP00000297157
Original member Current member NCBI NM_203288.2 NP_976033.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_203288.2Link to Protein Sequence:NP_976033.1Re-query CCDS DB by Nucleotide ID:NM_203288Re-query CCDS DB by Protein ID:NP_976033Link to BLAST:NP_976033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_976033.1 221 Q8TA86 221 100% 0 0

Chromosomal Locations for CCDS 5440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 33095234 33095432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33096493 33096554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33097271 33097362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33099307 33099436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33100531 33100561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33109221 33109372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTCGTCCCGGCCTGGGCGCGAGGACGTGGGGGCTGCGGGCGCGCGGCGGCCGCGTGAGCCGCCGGAGC
AGGAGCTGCAGCGACGTCGGGAGCAGAAGCGGCGGCGACACGACGCGCAGCAGCTGCAGCAGCTCAAGCA
CCTGGAGTCCTTTTACGAAAAACCTCCTCCTGGGCTTATCAAGGAAGATGAGACTAAGCCAGAAGATTGC
ATACCAGATGTACCAGGCAATGAACACGCCAGGGAATTTCTGGCTCATGCACCAACTAAAGGACTTTGGA
TGCCACTGGGGAAAGAAGTCAAAGTTATGCAGTGTTGGCGTTGCAAACGCTATGGTCACCGAACGGGTGA
CAAAGAATGCCCTTTCTTTATCAAAGGCAACCAAAAGTTAGAGCAGTTCAGAGTGGCACATGAAGATCCC
ATGTATGACATCATACGAGACAATAAACGACATGAAAAGGACGTAAGGATACAGCAGTTAAAACAGTTAC
TGGAGGATTCTACCTCAGATGAAGATAGGAGCAGCTCCAGTTCCTCTGAAGGTAAAGAGAAACACAAGAA
AAAGAAGAAGAAAGAAAAGCATAAGAAAAGGAAGAAAGAAAAGAAAAAGAAGAAAAAACGGAAGCACAAA
TCTTCCAAGTCAAATGAGGGTTCTGACTCAGAGTGA

Translation (221 aa):
MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGLIKEDETKPEDC
IPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKECPFFIKGNQKLEQFRVAHEDP
MYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKHK
SSKSNEGSDSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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