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Report for CCDS14270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14270.1 Public Homo sapiens X RP2 24 110 108 CCDS HistoryNCBI Gene:6102Re-query CCDS DB by CCDS ID:14270.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000218340.4 ENSP00000218340.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000218340.4Link to Ensembl Protein Viewer:ENSP00000218340.3Re-query CCDS DB by Nucleotide ID:ENST00000218340Re-query CCDS DB by Protein ID:ENSP00000218340
Original member Current member NCBI NM_006915.3 NP_008846.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006915.3Link to Protein Sequence:NP_008846.2Re-query CCDS DB by Nucleotide ID:NM_006915Re-query CCDS DB by Protein ID:NP_008846Link to BLAST:NP_008846.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008846.2 350 O75695 350 100% 0 0

Chromosomal Locations for CCDS 14270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 46837101 46837202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46853476 46854141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46859988 46860102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46877505 46877590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46879686 46879769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGGCTGCTTCTTCTCCAAGAGACGGAAGGCTGACAAGGAGTCGCGGCCCGAGAACGAGGAGGAGCGGC
CAAAGCAGTACAGCTGGGATCAGCGCGAGAAGGTTGATCCAAAAGACTACATGTTCAGTGGACTGAAGGA
TGAAACAGTAGGTCGCTTACCTGGGACGGTAGCAGGACAACAGTTTCTCATTCAAGACTGTGAGAACTGT
AACATCTATATTTTTGATCACTCTGCTACAGTTACCATTGATGACTGTACTAACTGCATAATTTTTCTGG
GACCCGTGAAAGGCAGCGTGTTTTTCCGGAATTGCAGAGATTGCAAGTGCACATTAGCCTGCCAACAATT
TCGTGTGCGAGATTGTAGAAAGCTGGAAGTCTTTTTGTGTTGTGCCACTCAACCCATCATTGAGTCTTCC
TCAAATATCAAATTTGGATGTTTTCAATGGTACTATCCTGAATTAGCTTTCCAGTTCAAAGATGCAGGGC
TAAGTATCTTCAACAATACATGGAGTAACATTCATGACTTTACACCTGTGTCAGGAGAACTCAACTGGAG
CCTTCTTCCAGAAGATGCTGTGGTTCAGGACTATGTTCCTATACCTACTACCGAAGAGCTCAAAGCTGTT
CGTGTTTCCACAGAAGCCAATAGAAGCATTGTTCCAATATCCCGGGGTCAGAGACAGAAGAGCAGCGATG
AATCATGCTTAGTGGTATTATTTGCTGGTGATTACACTATTGCAAATGCCAGAAAACTAATTGATGAGAT
GGTTGGTAAAGGCTTTTTCCTAGTTCAGACAAAGGAAGTGTCCATGAAAGCTGAGGATGCTCAAAGGGTT
TTTCGGGAAAAAGCACCTGACTTCCTTCCTCTTCTGAACAAAGGTCCTGTTATTGCCTTGGAGTTTAATG
GGGATGGTGCTGTAGAAGTATGTCAACTTATTGTAAACGAGATATTCAATGGGACCAAGATGTTTGTATC
TGAAAGCAAGGAGACGGCATCTGGAGATGTAGACAGCTTCTACAACTTTGCTGATATACAGATGGGAATA
TGA

Translation (350 aa):
MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENC
NIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESS
SNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAV
RVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRV
FREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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