NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48245.1 Public Mus musculus 1 Rfx8 23 108 98 CCDS HistoryNCBI Gene:619289Re-query CCDS DB by CCDS ID:48245.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151913.2 ENSMUSP00000121212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151913.2Link to Ensembl Protein Viewer:ENSMUSP00000121212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151913Re-query CCDS DB by Protein ID:ENSMUSP00000121212
Original member Current member NCBI NM_001145660.1 NP_001139132.1 Accepted alive Link to Nucleotide Sequence:NM_001145660.1Link to Protein Sequence:NP_001139132.1Re-query CCDS DB by Nucleotide ID:NM_001145660Re-query CCDS DB by Protein ID:NP_001139132Link to BLAST:NP_001139132.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139132.1 596 D3YU81 596 100% 0 0

Chromosomal Locations for CCDS 48245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39665463 39665657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39670270 39670583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39672186 39672300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39678657 39678751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39680842 39680998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39682909 39682967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39683600 39683750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39685495 39685608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39688573 39688650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39690091 39690201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39695898 39695961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39710158 39710244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39711378 39711439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39718418 39718541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39720878 39720942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGCGGAGGCGGTGCCGGCCTCTCCTGCGAGTGGCCTGGGCCTGCACCGGGGTATCATTCAATGGCTGG
TTGACAATTTCTGCATCTGTGAAGGGTTCAGCGTGCCCCGATGTCTCATGTATGAGATTTATGTCGAGAC
CTGTGGGCAGAGTGCTCAGAACCAAGTCAACCCAGCGACATTTGGGAAGCTTGTGCGCTTGGTTTTCCCT
GACCTGGGCACCCGGAGGCTGGGCACACGAGGAAGTGCCAGGTATCATTATGATGGGATCTACATCAAGA
AGAGCTCCTTCTTCTACGCTCATTACTGCTACCTGCTGGGTAAAAAGAGCTGTCACAGTGGCAATCTTAT
TGCCTTCGGAAAATTTCCTGACTATAGCAACGTTCTCCAGCAGGAAGAAACATGTGAAAATCATTCACCA
ATAAAGAAGGACCCGATGGGCTCACCTGTGTCTCCATTCAGAAGATGTCCGGTCTGGGAACAAGAGCTGG
CAAACAAGTACTCCTGTAAGCTGGTGGTCTTTCTTGCTGATGAATACTGCAACTACTGTCGAGACATTTT
ACAGAATGTGAGGAACCAAGAACTGGAGAAGGTGGAGGATTTAATCACATCCTTCTGGAAATCTCGGCAG
CAAGACACAGTCATGCTCATGTCTCTGCCCGACGTGCGCCAGCTCTTAGGATGCTATGACATGCAGCTGT
ATAAGGGCCTGGAAGACATGCTGCTCCCCGACTTCCTGGAGGACGTTAGTATCCAGTACCTGAAATCTGT
CCGGCTGTTTAGTAAGAGATTTAAACTGTGGCTTCTCGGTGCTCTGGAAGGGTTTCCTGCCATCTTACAG
ATCTCTAAGCTCAAAGAAGTCACTGGATTCGTCAAAAGACTCAGGAGAAAGACGTACCTTTCCAACATGG
CGAAGACGATGAAAATGGTCCTGAAGAACAGCAGGAGAATCGGCCTCTTGAAGTCAGACCTTCGTGCCAT
CATCAGAGAAGGCACTCTGGATATTTCGAAGAAGGTCCTGGAAGGTGACTCCGACCATGAAGAGGAGCCA
GAGAGCCACACAGAGATGAAATGCTTAGGCTGTTTAATTTCTTTGCTGGAAACTTCAACAGATCTTGCTG
AACTCCTGAACTGTGTGTCTTCAAACCTCCAAGTGCTTGTCTTCCAGCCGAGCAAAAACAAAGAGGATTT
TATCAAGCTCGCTGCCAGCTTTCAACTGAAATGGAATTTTCTTCTCACCGCCGTGAGCAAAGCCATGACC
CTGAGCCACAGAGACAGTTTCGGTGCCTGGCATCTGTTTCATCTGCTGCTCTTGGAATATGTGATTCACA
TCCTGGAGTCATGCATAGAAGAGGAGGAAGAGGAGGACCTGGGGAGCCTCCAGGACCTGCTGTCAGATGA
CCAGTTCCTCACCCAGCCAGACCAGGCCCTTTTCCACCCTCTGGATTCTTTGCCAACATCGGAATGTGCA
AGCCGGAATGTGGAGTCACCTCAGGTGACGCTGAAACACACGAGCCAGAGCTGCGGTCCCATGGGCATGG
GCAGCGTGGTTCTCCAGGTGCTGGGCTTCCTGGTGGACACCGCCACAGGCAATAAGCTTGTCCAGGTATT
GCTGGAGGACAAAACCACTGAGAGCGCTGTGAAGCTCAGCCTTCCCGTGGGACAAGAGGCCCTCATAACC
CTAAGCAATGGACAGAGGTTTGTGATCCACATATCAGATGTGCCCCAAAGCTCAGAAAACACGTATTGCA
GGAAAAGCAACGCGAACGTGCAAGGTGGTTTGCTGGAGTAG

Translation (596 aa):
MAEAVPASPASGLGLHRGIIQWLVDNFCICEGFSVPRCLMYEIYVETCGQSAQNQVNPATFGKLVRLVFP
DLGTRRLGTRGSARYHYDGIYIKKSSFFYAHYCYLLGKKSCHSGNLIAFGKFPDYSNVLQQEETCENHSP
IKKDPMGSPVSPFRRCPVWEQELANKYSCKLVVFLADEYCNYCRDILQNVRNQELEKVEDLITSFWKSRQ
QDTVMLMSLPDVRQLLGCYDMQLYKGLEDMLLPDFLEDVSIQYLKSVRLFSKRFKLWLLGALEGFPAILQ
ISKLKEVTGFVKRLRRKTYLSNMAKTMKMVLKNSRRIGLLKSDLRAIIREGTLDISKKVLEGDSDHEEEP
ESHTEMKCLGCLISLLETSTDLAELLNCVSSNLQVLVFQPSKNKEDFIKLAASFQLKWNFLLTAVSKAMT
LSHRDSFGAWHLFHLLLLEYVIHILESCIEEEEEEDLGSLQDLLSDDQFLTQPDQALFHPLDSLPTSECA
SRNVESPQVTLKHTSQSCGPMGMGSVVLQVLGFLVDTATGNKLVQVLLEDKTTESAVKLSLPVGQEALIT
LSNGQRFVIHISDVPQSSENTYCRKSNANVQGGLLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH