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Report for CCDS32362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32362.1 Public Homo sapiens 16 PTX4 24 110 108 CCDS HistoryNCBI Gene:390667Re-query CCDS DB by CCDS ID:32362.1Re-query CCDS DB by GeneID:390667See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 32362.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293922.1 ENSP00000293922.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000293922.1Link to Ensembl Protein Viewer:ENSP00000293922.1Re-query CCDS DB by Nucleotide ID:ENST00000293922Re-query CCDS DB by Protein ID:ENSP00000293922
Original member Current member NCBI NM_001013658.1 NP_001013680.1 Accepted alive Link to Nucleotide Sequence:NM_001013658.1Link to Protein Sequence:NP_001013680.1Re-query CCDS DB by Nucleotide ID:NM_001013658Re-query CCDS DB by Protein ID:NP_001013680Link to BLAST:NP_001013680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013680.1 473 Q96A99-2 473 100% 0 0

Chromosomal Locations for CCDS 32362.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1485939 1486579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1487316 1487970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1488342 1488467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGGGAGTGGAAACTGGGAGGTCACAGGTCCACCTTGTGGCAGTCGGTGTGAACGGCCTCCCGGACTCC
CACGCGGGGTCCACGGACAGTTCCGGAGTGCTGTGGGCCTGTCGGGCCTGCGCTGGTTCCGGAGATTCCA
GGAGGTGACCTGGACACACCTGCAGAACATCGCCAGCAACTACAACGTGTCCTACAACGTTGACGTCCGG
TTCCGGAGCCTGGCGGAAGAGAGCCAGGCTGTGGCTCAGGCAGTCAACCGGTCACAGGCCTCGGTGCAGG
GGGAGCTGGCGCAGCTCAAGGCCTGGGTGAGGAAGCTGCAGCGCCGAGGCCGGAAAGTAGACACGCGGCT
GCGGGCCTTGGACCTCACCCTGGGCGAGAGGAGCCAGCAGCGGGCCCGGGAAAGGAAGGCACACAAGGCC
CAGAGGGACGCCCTGCAGGACTCACTGGCACGCCTGGAGGGCCTCGTCCACAGCCAGGGCGCCAGGCTGG
CTGCTCTGGAGGGGCGGCTGCCCGTGGCCCACCCTGGCACTGCAGCCCTCGGGCCGGCCCTGGTCCCAAC
CCCAACCCAGCCTGAGGAGCTGGGCCCGACCTCCCTGAAGCTTCAGAGGGACAGGCAGGAGCTCCGAGCT
GCCTCTGAGCACAGGGGCCCCCCACAGGACTCCTCGGCCCCTCTCCAAGGGAGGCGGGAGCCTCCAGCCT
CAGGCAGCCATCGGGTACTCAGTGGGACTGCCCCAAAAGACCCTCGGCAGCAGGCATGGTCCCCCCAGGT
GCCAGGAGAGATTTGCGGCGTGGGCCCCACCCTCGTTTTCCCAAACGCCTCCACCAGGAACGTGGTCTTC
CTCAGCCCTGGTTTCGTCACTGCCCTGCGAGCCCTGTCCTTCTGCAGCTGGGTCCGCACGGCCTCCGGCC
GCCTGGGCACCCTCCTGTCCTACGCCACCGAGGACAATGACAACAAGCTGGTGCTGCACGGCCGAGACTC
CCTGCTGCCCGGATCCATCCACTTCGTGATCGGGGACCCGGCCTTCAGGGAGCTGCCCTTGCAGCTGCTG
CTGGACGGCCAGTGGCACCACATCTGTGTCATCTGGACGTCCACCCAGGGCAGGTACTGGCTCCACGTGG
ATCGCAGGCTGGTGGCCACCGGCTCCCGCTTCAGGGAGGGCTATGAGATCCCCCCCGGAGGGTCCCTCGT
GCTGGGCCAGGAACAAGACAGCGTGGGGGGCGGATTCGACAGCTCCGAGGCCTTCGTGGGGAGCATGTCT
GGCTTGGCTATCTGGGATCGGGCGCTGGTTCCCGGGGAAGTTGCAAACCTTGCCATCGGGAAAGAGTTCC
CGACAGGTGCCATCCTGACGCTGGCCAATGCTGCACTAGCAGGCGGATTTGTGCAGGGGGCCAACTGCAC
CTGCCTGGAACGCTGTCCCTGA

Translation (473 aa):
MGSGNWEVTGPPCGSRCERPPGLPRGVHGQFRSAVGLSGLRWFRRFQEVTWTHLQNIASNYNVSYNVDVR
FRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARERKAHKA
QRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEELGPTSLKLQRDRQELRA
ASEHRGPPQDSSAPLQGRREPPASGSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFPNASTRNVVF
LSPGFVTALRALSFCSWVRTASGRLGTLLSYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPLQLL
LDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMS
GLAIWDRALVPGEVANLAIGKEFPTGAILTLANAALAGGFVQGANCTCLERCP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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