NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS35045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35045.1 Public Homo sapiens 9 FOXB2 24 110 108 CCDS HistoryNCBI Gene:442425Re-query CCDS DB by CCDS ID:35045.1Re-query CCDS DB by GeneID:442425See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35045.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376708.1 ENSP00000365898.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376708.1Link to Ensembl Protein Viewer:ENSP00000365898.1Re-query CCDS DB by Nucleotide ID:ENST00000376708Re-query CCDS DB by Protein ID:ENSP00000365898
Original member Current member NCBI NM_001013735.1 NP_001013757.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013735.1Link to Protein Sequence:NP_001013757.1Re-query CCDS DB by Nucleotide ID:NM_001013735Re-query CCDS DB by Protein ID:NP_001013757Link to BLAST:NP_001013757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013757.1 432 Q5VYV0 432 100% 0 0

Chromosomal Locations for CCDS 35045.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 77019655 77020953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGCCGCGGCCGGGGAAGAGCTCGTACAGCGACCAAAAACCGCCCTACTCTTACATCTCGCTGACCGCCA
TGGCAATCCAGCACTCGGCCGAGAAGATGCTGCCGCTGAGCGACATCTACAAGTTCATCATGGAGCGCTT
CCCCTACTACCGCGAGCACACACAGCGCTGGCAGAACAGCCTGCGCCACAACCTCTCCTTCAACGACTGC
TTCATCAAGATTCCGCGGAGGCCCGACCAGCCTGGCAAGGGTAGCTTCTGGGCGCTGCACCCCGACTGCG
GGGACATGTTCGAGAACGGCAGCTTCCTGCGGCGTCGCAAGCGCTTCAAGGTGCTGCGCGCCGACCATAC
TCACTTGCACGCGGGAAGCACCAAGAGCGCGCCGGGCGCCGGTCCGGGAGGGCACCTTCACCCCCATCAC
CACCACCACCCCCACCACCACCATCATCACCACGCTGCCGCACACCACCACCATCACCACCACCCACCCC
AGCCGCCGCCGCCGCCGCCCCCGCCGCCGCCGCACATGGTACACTATTTCCATCAGCAACCGCCTACTGC
TCCGCAGCCGCCTCCGCACCTCCCGTCACAGCCCCCGCAGCAACCGCCCCAGCAGTCGCAGCCTCAGCAG
CCGTCTCACCCCGGCAAGATGCAGGAGGCGGCGGCCGTGGCGGCGGCGGCGGCGGCGGCCGCGGCAGCCG
CGGTGGGCAGCGTGGGACGCCTGTCTCAGTTCCCACCCTACGGGCTGGGCTCGGCCGCCGCCGCTGCCGC
CGCGGCCGCGGCGTCCACGTCAGGCTTCAAGCACCCCTTTGCCATTGAGAACATTATTGGCCGGGACTAC
AAGGGCGTGCTGCAGGCTGGAGGGCTGCCCTTGGCGTCCGTCATGCACCACCTGGGCTACCCCGTGCCCG
GCCAGCTTGGCAACGTCGTCAGCTCCGTGTGGCCGCACGTTGGCGTCATGGATTCGGTGGCCGCCGCCGC
GGCCGCCGCAGCCGCAGCCGGAGTCCCTGTAGGCCCGGAGTATGGGGCCTTCGGGGTCCCGGTCAAGTCC
CTGTGCCACTCGGCAAGCCAGAGCCTGCCTGCCATGCCGGTGCCCATCAAGCCCACGCCTGCGCTGCCGC
CCGTGTCCGCGCTGCAGCCGGGGCTCACTGTCCCCGCGGCTTCGCAGCAGCCTCCGGCGCCATCCACCGT
GTGCTCCGCGGCCGCGGCCTCGCCCGTTGCCTCTCTGCTGGAGCCCACAGCCCCTACCTCGGCCGAAAGC
AAGGGCGGCTCCTTGCACTCGGTGCTAGTGCACTCCTAG

Translation (432 aa):
MPRPGKSSYSDQKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNSLRHNLSFNDC
FIKIPRRPDQPGKGSFWALHPDCGDMFENGSFLRRRKRFKVLRADHTHLHAGSTKSAPGAGPGGHLHPHH
HHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPHMVHYFHQQPPTAPQPPPHLPSQPPQQPPQQSQPQQ
PSHPGKMQEAAAVAAAAAAAAAAAVGSVGRLSQFPPYGLGSAAAAAAAAAASTSGFKHPFAIENIIGRDY
KGVLQAGGLPLASVMHHLGYPVPGQLGNVVSSVWPHVGVMDSVAAAAAAAAAAGVPVGPEYGAFGVPVKS
LCHSASQSLPAMPVPIKPTPALPPVSALQPGLTVPAASQQPPAPSTVCSAAAASPVASLLEPTAPTSAES
KGGSLHSVLVHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH