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Report for CCDS16128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16128.1 Public Mus musculus 2 Scrn3 23 108 98 CCDS HistoryNCBI Gene:74616Re-query CCDS DB by CCDS ID:16128.1Re-query CCDS DB by GeneID:74616See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16128.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090811.10 ENSMUSP00000088320.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090811.10Link to Ensembl Protein Viewer:ENSMUSP00000088320.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090811Re-query CCDS DB by Protein ID:ENSMUSP00000088320
Original member Current member NCBI NM_029022.1 NP_083298.1 Accepted alive Link to Nucleotide Sequence:NM_029022.1Link to Protein Sequence:NP_083298.1Re-query CCDS DB by Nucleotide ID:NM_029022Re-query CCDS DB by Protein ID:NP_083298Link to BLAST:NP_083298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083298.1 418 Q3TMH2 418 100% 0 0

Chromosomal Locations for CCDS 16128.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73315434 73315592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73318246 73318427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73319303 73319499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73321985 73322194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73329763 73329925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73330983 73331157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73335711 73335881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGAACCCTATTCCTGTGACACTTTTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGGTTATTTTTG
GAAAAAATTCAGACAGACTCTTTGATGAAGTACAAGAAGTAATTTACTGTCCAGCTGCAGTTCATAATGA
TTTGGAAAAACGTCTCAAGTGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTGTTGTCCTT
AGTCGCCCAGCTTGGCTGTGGGGGGCAGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGGGAATGAGG
CTGTATGGGGAAGAGAAGACATTTCTAAGGAGGAAGCACTTTTGGGCATGGACCTTGTCAGGCTGGGCCT
TGAGAGAGCTGACACGGCTGAGAAAGCTCTGGATGTCATTGTTGACTTACTAGAAAAGTATGGCCAAGGT
GGAAACTGCGCAGAGGGCAAAGAGTTCAGCTATTACAACAGTTTCCTGATAGCTGACAGGAATGAAGCCT
GGATCCTGGAGACGTCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAGGCGTTCGTAATATTTCCAATCA
GCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACGCTAAGCAGAGGGGCTGG
TGGGATGGCAAAGAAGAATTTGATTTTACTGCGGCCTATTCTTACATTGACACGGCTGCTATGATGACTT
CACCAAGCAGGTACTGCCAGGGCTACAAGCTTCTGGATAAACACAGAGGAAACATAACTTTTGAAACGAT
GATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATG
GTTTCTGTTTTACCTCAGGATCCCAGCCTTCCTTGCATTCACCTCTTTACTGCAACTCCGCACCCTGAGA
GGTCTGTTTTTAAGCCTTTCATATTTGTACCACACATTTCACCACTGTTGGATACAAAATCACCAACATT
TGAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAA
CATCAAGAGGCCTTGGAAATGATAAGTAACAGTAAGGAAAAAGGCAAGACAATATTGGACAAGATGAGGA
AGCTGGAAAAAGCAGTATCTGAAGAGATAGAATCAATCCTCCAGAGTGGACATCTCGACGAGGAGAAAAC
TGTTAATCTCTTTCCTCAATATGTGAAAGATGAAATTAAAATTTATCAGTCAAATATTAGTTCTTAA

Translation (418 aa):
MEPYSCDTFVALPPATVGNRVIFGKNSDRLFDEVQEVIYCPAAVHNDLEKRLKCTYIEVDQVPETYAVVL
SRPAWLWGAEMGANEHGVCIGNEAVWGREDISKEEALLGMDLVRLGLERADTAEKALDVIVDLLEKYGQG
GNCAEGKEFSYYNSFLIADRNEAWILETSGKYWAAERVQGVRNISNQLSITTKIDREHPDMRNYAKQRGW
WDGKEEFDFTAAYSYIDTAAMMTSPSRYCQGYKLLDKHRGNITFETMMEILRDRPSGINMKGEFLTTASM
VSVLPQDPSLPCIHLFTATPHPERSVFKPFIFVPHISPLLDTKSPTFEPERPVAKKPYVKPDRRHPLYQK
HQEALEMISNSKEKGKTILDKMRKLEKAVSEEIESILQSGHLDEEKTVNLFPQYVKDEIKIYQSNISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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