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Report for CCDS27639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27639.1 Public Mus musculus 15 Tmem184b 23 108 98 CCDS HistoryNCBI Gene:223693Re-query CCDS DB by CCDS ID:27639.1Re-query CCDS DB by GeneID:223693See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074991.9 ENSMUSP00000074518.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074991.9Link to Ensembl Protein Viewer:ENSMUSP00000074518.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000074991Re-query CCDS DB by Protein ID:ENSMUSP00000074518
Original member Current member EBI ENSMUST00000178522.2 ENSMUSP00000136416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178522.2Link to Ensembl Protein Viewer:ENSMUSP00000136416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178522Re-query CCDS DB by Protein ID:ENSMUSP00000136416
Original member Current member NCBI NM_001253817.1 NP_001240746.1 Accepted alive Link to Nucleotide Sequence:NM_001253817.1Link to Protein Sequence:NP_001240746.1Re-query CCDS DB by Nucleotide ID:NM_001253817Re-query CCDS DB by Protein ID:NP_001240746Link to BLAST:NP_001240746.1
Original member Current member NCBI NM_172608.1 NP_766196.1 Accepted alive Link to Nucleotide Sequence:NM_172608.1Link to Protein Sequence:NP_766196.1Re-query CCDS DB by Nucleotide ID:NM_172608Re-query CCDS DB by Protein ID:NP_766196Link to BLAST:NP_766196.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240746.1 407 Q8BG09 407 100% 0 0
NP_766196.1 407 Q8BG09 407 100% 0 0

Chromosomal Locations for CCDS 27639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79362644 79362885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79365285 79365479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79365787 79365956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79366587 79366678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79369670 79369745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79369898 79369988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79377047 79377212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79378464 79378655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGACAGTGAGGGGGGCCGCGCTGGCCCCAGACCCAGCGTCACCCACAACCACAACAGCTTCACCTAGCG
TCTCTGCCACCCCCGAGGGCAGCCCCACAGCCATGGAGCACCCTGTGTTCCTGATGACCACTGCCGCCCA
GGCCATCTCCGGCTTCTTTGTGTGGACAGCTCTGCTCATCACTTGCCACCAGATCTACATGCATCTGCGC
TGCTACAGCCGTCCCAATGAGCAGCGCCACATCGTGCGCATCCTCTTCATCGTGCCCATCTACGCCTTCG
ACTCCTGGCTCAGCCTCCTCTTCTTCACCAATGACCAGTACTACGTGTACTTCGGCACCGTCCGAGACTG
CTATGAGGCCTTTGTCATCTATAACTTCCTGAGCTTGTGCTATGAGTACCTCGGGGGAGAGAGTGCCATC
ATGTCTGAGATCAGAGGGAAGGCCATTGAGTCCAGCTGTATGTACGGCACGTGCTGCCTCTGGGGAAAGA
CCTACTCCATCGGATTCCTGCGGTTCTGTAAACAGGCCACCCTGCAGTTCTGTGTGGTGAAGCCACTCAT
GGCCGTCAGCACCGTTATACTCCAGGCCTTTGGCAAGTACCGGGACGGAGACTTTGATGTCACCAGTGGG
TACCTCTACGTGACCATCATCTACAACATCTCCGTCAGCCTGGCCCTATATGCGCTCTTCCTCTTCTACT
TTGCCACAAGGGAGCTGCTCAGCCCCTACAGCCCTGTCCTCAAGTTCTTCATGGTCAAGTCCGTCATATT
CCTCTCCTTCTGGCAAGGCATGCTGCTGGCCATCTTAGAGAAGTGCGGGGCCATCCCCAAGATCAACTCA
GCGCGAGTGTCAGTGGGTGAGGGCACCGTGGCTGCCGGCTACCAGGACTTCATCATCTGTGTGGAGATGT
TCTTCGCGGCCTTGGCCCTGCGGCATGCCTTCACCTACAAGGTCTACGCTGACAAGAGACTGGACGCTCA
AGGCCGCTGCGCCCCCATGAAGAGCATCTCCAGCAGCCTCAAAGAGACCATGAACCCACACGATATTGTG
CAGGACGCCATCCACAACTTCTCGCCAGCCTACCAGCAGTACACGCAGCAGTCCACTCTGGAGCCCGGGC
CCACCTGGCGTGGCGGCACGCACAGCCTTTCCCGCTCCCACAGCCTTAGTGGTGCACGCGACAATGAGAA
GACTCTGCTGCTCAGCTCTGATGATGAGTTCTAA

Translation (407 aa):
MTVRGAALAPDPASPTTTTASPSVSATPEGSPTAMEHPVFLMTTAAQAISGFFVWTALLITCHQIYMHLR
CYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEAFVIYNFLSLCYEYLGGESAI
MSEIRGKAIESSCMYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVILQAFGKYRDGDFDVTSG
YLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKINS
ARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIV
QDAIHNFSPAYQQYTQQSTLEPGPTWRGGTHSLSRSHSLSGARDNEKTLLLSSDDEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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