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Report for CCDS23519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23519.1 Public Mus musculus 9 Amt 23 108 98 CCDS HistoryNCBI Gene:434437Re-query CCDS DB by CCDS ID:23519.1Re-query CCDS DB by GeneID:434437See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035230.6 ENSMUSP00000035230.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035230.6Link to Ensembl Protein Viewer:ENSMUSP00000035230.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035230Re-query CCDS DB by Protein ID:ENSMUSP00000035230
Original member Current member NCBI NM_001013814.2 NP_001013836.1 Accepted alive Link to Nucleotide Sequence:NM_001013814.2Link to Protein Sequence:NP_001013836.1Re-query CCDS DB by Nucleotide ID:NM_001013814Re-query CCDS DB by Protein ID:NP_001013836Link to BLAST:NP_001013836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013836.1 403 Q8CFA2 403 100% 0 0

Chromosomal Locations for CCDS 23519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108296936 108297025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108297128 108297295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108297712 108297792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108298768 108298899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108299380 108299458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108299745 108299890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108300534 108300714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108301073 108301228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108301320 108301498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGCATCGGATAGTCAGTGTGGTAGCCCCTCTGGGTTTTCGCCTGCAGGCACAACCCTTGGTCCAGAGTC
GCCCACTCAGTTCTGTACAGGATGTGCTCCGCAGGACTCCACTCTATGACTTCCACCTAGCTCATGGAGG
AAAAATGGTGGCGTTTGCAGGGTGGAGTCTGCCTGTACAATACCGTGACAGTCATGTTGATTCACACCTG
CACACACGCCGGCATTGCTCTCTCTTTGATGTGTCCCACATGCTACAGACCAAGATATTTGGCTGTGACC
GAGTGAAGCTGCTGGAGAGTGTAGTGGTTGGAGACATTGCGGAACTAAGGCCTAACCAGGGAACACTCTC
TTTGTTTACCAACGAAGCTGGAGGCATCTTAGACGACTTGATTGTAAGCAATACTTCTGAGGGGCACCTG
TATGTAGTATCCAATGCTGGCTGCCGGGACAAGGACTTGGCTCTCATGCAGGACAAGGTCAAGGAGTTCC
AGAACAGGGGCCTGGATGTAGGCCTGGAGGTGGTAGAGAATGCCCTGTTAGCTCTGCAAGGACCCACGGC
AACACAGGTGTTACAGGCTGGGGTGACAGATGATATGAAGAAACTACCCTTCATGACAAGTGCTGTGATG
GAGGTGTTCGGTGTGTCTGGCTGTCGTGTGACCCGCTGTGGCTACACAGGAGAAGATGGTGTTGAGATAT
CAGTCCCAGCAACAGGGGCAGTCCACTTGGCAACTACTCTGTTGAAAAATCCAGAGGTAAAGCTGGCAGG
ACTAGCAGCCCGAGATAGCCTGCGCCTGGAGGCAGGCCTCTGTCTGTATGGGAATGACATCGATGAACAT
ACTACACCTGTGGAGGGCAGCCTCAGCTGGACACTGGGGAAGCGCCGCCGCATTGCTATGGACTTCCCAG
GAGCCAAAATCATTGTTCCCCAACTGAAGGGTGAGGTACAGCGGAGACGTGTGGGGCTGATATGTGAAGG
GGCTCCAGTGAGAGCACACAGTCCTATTTTGAACACAGAAGGCACTGTGATAGGTACTGTGACCAGTGGC
TGCCCTTCACCCAGCCTGAAGAAAAATGTGGCGATGGGTTATGTGCCATTTAAGTACAGTCGACCAGGGA
CACAGCTGCTGGTGGAAGTCCGGCGGAAGCAGCAAATGACAGTGGTTAGCAAAATGCCCTTTGTGCCCAC
CAACTATTATACTCTCAAGTGA

Translation (403 aa):
MHRIVSVVAPLGFRLQAQPLVQSRPLSSVQDVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHL
HTRRHCSLFDVSHMLQTKIFGCDRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHL
YVVSNAGCRDKDLALMQDKVKEFQNRGLDVGLEVVENALLALQGPTATQVLQAGVTDDMKKLPFMTSAVM
EVFGVSGCRVTRCGYTGEDGVEISVPATGAVHLATTLLKNPEVKLAGLAARDSLRLEAGLCLYGNDIDEH
TTPVEGSLSWTLGKRRRIAMDFPGAKIIVPQLKGEVQRRRVGLICEGAPVRAHSPILNTEGTVIGTVTSG
CPSPSLKKNVAMGYVPFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTNYYTLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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