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Report for CCDS53058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53058.1 Public Mus musculus X Rhox3f 23 108 98 CCDS HistoryNCBI Gene:621852Re-query CCDS DB by CCDS ID:53058.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115172.11 ENSMUSP00000110826.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115172.11Link to Ensembl Protein Viewer:ENSMUSP00000110826.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000115172Re-query CCDS DB by Protein ID:ENSMUSP00000110826
Original member Current member EBI ENSMUST00000184451.7 ENSMUSP00000138833.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184451.7Link to Ensembl Protein Viewer:ENSMUSP00000138833.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184451Re-query CCDS DB by Protein ID:ENSMUSP00000138833
Original member Current member NCBI NM_001040089.3 NP_001035178.3 Accepted alive Link to Nucleotide Sequence:NM_001040089.3Link to Protein Sequence:NP_001035178.3Re-query CCDS DB by Nucleotide ID:NM_001040089Re-query CCDS DB by Protein ID:NP_001035178Link to BLAST:NP_001035178.3

Chromosomal Locations for CCDS 53058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37581352 37581532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37581783 37582152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37584026 37584071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37585261 37585311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGAGCATGAAGCCAGAACGTTCCATGTCTAACTGGATACATAGTAATGTGGAACCGGCTGGAAGAAATC
TCTTCCAGGTCAACGGTCACCGCTCTGCTCTATTACCGGAACTACCTCAGGATTACCACAGAGCTTCAAG
GTCAGTCAACGGATGTGAGACTAAAATGGACAACACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCA
AGAAATGAGGAAGATGGAGGACAGGTCGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAG
AAGCATTAAATGGAGAGAGTCCCGCCGCTGCTGGCACTGCAGGCCTTGTAGAGGAAGACAGGAACAAGGA
AGATGGTGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGGAGCAGATTCCTGAGCATGTTGAA
GGAGAGAGTGACCAGGCTGAAGCGCTAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGT
GGCAGCTGGACGAACTGGAGAGAATTTTCCGGATGAATTATTTTCTCAGTCTAGAAGCAAGAAAACAACT
GGCCCGATGGATGGGTGTGAATGAAGCCATAGTGAAGAGATGGTTTCAGAAGAGGAGAGAAAAATACAGG
TGGTATAAGAGGCTATAA

Translation (215 aa):
MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEA
RNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVE
GESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYR
WYKRL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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