NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52135.1 Public Mus musculus 7 Vmn1r175 23 108 98 CCDS HistoryNCBI Gene:622222Re-query CCDS DB by CCDS ID:52135.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166141.1 ENSMUSP00000126357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166141.1Link to Ensembl Protein Viewer:ENSMUSP00000126357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166141Re-query CCDS DB by Protein ID:ENSMUSP00000126357
Original member Current member EBI ENSMUST00000228383.1 ENSMUSP00000154170.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228383.1Link to Ensembl Protein Viewer:ENSMUSP00000154170.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228383Re-query CCDS DB by Protein ID:ENSMUSP00000154170
Original member Current member NCBI NM_001166727.1 NP_001160199.1 Accepted alive Link to Nucleotide Sequence:NM_001166727.1Link to Protein Sequence:NP_001160199.1Re-query CCDS DB by Nucleotide ID:NM_001166727Re-query CCDS DB by Protein ID:NP_001160199Link to BLAST:NP_001160199.1

Chromosomal Locations for CCDS 52135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23808286 23809200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGTTGCTTCAGAATAAATCTGTGAAAACCACAGAGGAAGTGGCTCTTCAGGTCCTCTTGCTTTGCCAGG
TTGGGTTTGGGACTGCAGTCAACATTTTTCTGATTGTTCATAATTTATCTCCAATCTTGAATGGATCTCA
ACAGAGACCCATAAAAGTCATTCTAGCCAACTTAGCTGTGGGCAATACCTTGATTCTCCTCTTTGCATTT
CCAAACAATATGACACTTTTTGTTCCAAAGGACCCCCCAACTGACCTAAAATGTAAACTTGGGTACTTCA
TTTGGCTGGTGGCTCGAAGTACAAACATGTGCTCCACCTGCTTTCTGAGCACTTATCAGCTTGTCACTCT
TGCTCCAGGTACCTGGGGTAGGGTGATGCTCCGTGGAAGAGCCCCCAAATTTGTGAGGTATATTTGTTAT
AGTTGTTGGTTGTTCAGTGTCTTAAATAATGCTCACATTCCAATGAAAGTCAATGGTCCCCAGAAAACAC
ATAATGATACCAATACTAAAAACAAATGGGTTTGCTCCACCACTGGTTTCAGTATAGGCATGCGCATCTT
GTCATTTGCCCATGATGCAGTGTTCATCAGCATCATCATCTGGAGCAGTGTCTCCATGGTGATTCTCCTG
AACAGACACCACCAAAGATTGCAGCATATTCAATCCACAAATCAGAAGCTCAGAGTTCATGCTGAGACTA
GAGCATCCCACACCATCCTGTTGCTGGTGGTCACATTTGTGACCTGTTATCTTCTAGACTGTATTTGTAC
AGTCTGTAACATTTCTTTTTTGGACTCTCGGGTCTGGTTGAGGCGTGTCAAACAAATTTTGGATGTAAGC
TTCCCTACCTTTTCTCCATTACTCTTGATCTTTAGGGATCCTAAGGATCCTTGTTCTCTGCTATTCTGCT
GCTGA

Translation (304 aa):
MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAF
PNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICY
SCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILL
NRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVS
FPTFSPLLLIFRDPKDPCSLLFCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH