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Report for CCDS25656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25656.1 Public Mus musculus 11 Unc13d 23 108 98 CCDS HistoryNCBI Gene:70450Re-query CCDS DB by CCDS ID:25656.1Re-query CCDS DB by GeneID:70450See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075036.8 ENSMUSP00000074549.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075036.8Link to Ensembl Protein Viewer:ENSMUSP00000074549.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000075036Re-query CCDS DB by Protein ID:ENSMUSP00000074549
Original member Current member EBI ENSMUST00000174822.7 ENSMUSP00000134260.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174822.7Link to Ensembl Protein Viewer:ENSMUSP00000134260.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174822Re-query CCDS DB by Protein ID:ENSMUSP00000134260
Original member Current member NCBI NM_001009573.2 NP_001009573.2 Accepted alive Link to Nucleotide Sequence:NM_001009573.2Link to Protein Sequence:NP_001009573.2Re-query CCDS DB by Nucleotide ID:NM_001009573Re-query CCDS DB by Protein ID:NP_001009573Link to BLAST:NP_001009573.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009573.2 1083 B2RUP2-2 1083 100% 0 0

Chromosomal Locations for CCDS 25656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116062694 116062803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116063639 116063835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116064243 116064366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116064545 116064665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116064761 116064844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116065299 116065370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116065442 116065547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116066690 116066769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116067831 116067899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116068045 116068251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116068376 116068474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116068663 116068806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116069115 116069235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116069358 116069488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116069566 116069617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116069702 116069799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116069887 116069937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116070021 116070111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116070235 116070359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116070430 116070547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116073385 116073488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116073569 116073661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116073784 116073888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116074042 116074111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116074238 116074306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116074400 116074444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116075705 116075885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116076108 116076174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116076270 116076329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116076442 116076549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116076752 116076787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116077448 116077561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3252 nt):
ATGGCGACACACCTTTCCCACCCCCAGCGGCGTCCACTCTTGCGCCAGGCCATCAAGATAAGGCGCCGCA
GGGTCAGAGACCTGCAGGATCCACCACCCCAAGCCACCCAGGAGGTCCAGGTTCAGTCCCACCATTTCTC
CCCAGAGGAGCGGGACCTGCTGTATGAGGAAGCCCTCTATACTGTCCTGCACCGCCTGGGTCAGCCAGAG
CCCAACCATGTGAAGGAGGCCTCGGAACTGCTGAGCTATCTGCAGGAGGCTTTCCAGGTGCAGCCTGAGG
AGCACCAGCAGATGCTGCGGCGCGTCAGGGAGCTCGAGAAGCCAGTATTTTGCCTGAAGGCCACAGTGAA
ACAGGCCAAGGGTATTCTGGGAAAAGATGTCAGCGGGTTCAGCGACCCCTACTGCCTGCTGGGCATCGAG
CAGAAGGTTGGTGTAGCAGAGGGCAGCCCTGTGTCCCGACGTCGGCAGAAGGCAGTGGTGAAGCACACCA
TCCCGGAAGAGGAGACCCATCGCACCCAAGTCAAGAGCCAGACACTTAATCCCGTCTGGGACGAGACCTT
TATCTTGGAGTTTGAGGACATAGCCAATGCAAGCTTTCACCTGGACATGTGGGACCTGGACACTGTGGAG
TCTGTCAGGCAGAAGCTCGGGGAGCTCACGGACCTGCACGGGCTCCGGAGGATCTTTAAAGAAGCTCGGA
AGGATAAAGGCCAGGACGACTTTCTGGGGAATGTGGTTCTGAGGTTGCAGGACCTGCGCTGCCGAGAGGA
CCAGTGGTTCCCGCTAGAGCCCTGCACAGAGACCTACCCAGACCGCGGCCAGTGCCACCTTCAGTTCCAG
TTCATTCACAAGAGGAGAGCCACGGCGGCCAGCCGCTCTCAGCCCAGCTACACTGTACACTTTCACCTAC
TGCAGCAGCTGGTGTCCCATGAAGTCACACAGCACCAGGCCGGCAGTACCTCCTGGGACGCATCACTGAG
TCCCCAGGCTGTCACCATCCTCTTTCTCCACGCCACTCAGAAGGACCTGTCGGACTTCCACCAGTCCATG
GCGCAGTGGTTGGCCTACAGCCGCCTCTACCAGAGCCTGGAGTTCCCCAGCAGCTGCCTCCTGCACCCCA
TCACCAGCATAGAGTACCAGTGGATCCAGGGCCGACTCAAAGCAGAACAGCGGGAGGAGCTGGCCACCTC
CTTCACATCCCTGTTGGCCTATGGCCTCTCCCTTATCCGGAAGTTCCGCTCCGTCTTTCCCCTGTCTGTC
TCTGACTCCCCATCCAGGCTGCAGTCCCTCCTCAGAGTCTTGGTCCAGATGTGCAAAATGAAGGCCTTTG
GAGAACTGTGCCCAGACAGCGCTCCACTGTCCCAGCTGGTTTCTGAAGCTCTGCGGATGGGCACAGTTGA
GTGGTTTCACCTGATGCAGCAACACCATCAGCCCATGGGCATCCTGGAGGCTGGCAAGGCCTTGCTAAAT
CTGGTACAGGACGTCATGGGTGATCTGTACCAGTGTCGTCGCACATGGAACAAGATTTTCCACAATGTCC
TCAAGATAGACCTGTTCTCCATGGCCTTCCTGGAGCTGCAGTGGCTGGTGGCCAAGAGGGTACAGGACCA
CACGGTGGCGGCTGGCAACCTTGTTTCTCCAGATATTGGAGAGAGTCTGTTTCAGCTGTATGTCAGCCTG
AAGGAGCTCTGCCAGCTGGGCCCTGTCCCCTCAGACAGCCGTGAAGTCCTGGCCCTGGATGGCTTCCACC
GCTGGTTTCAGCCAGCCATCCCTTCCTGGCTGCAGAAGACTTACAGTGTCGCTCTGGAGCGGGTGCAGCG
TGCCGTACAGATGGACACGCTGGTACCCCTGGGCGAACTGACCAAGCACAGCACTTCTGCCGTGGATCTG
TCTACCTGCTTTGCCCAAATTAGCCACACTGCCCGGCAGCTGGACTGGCCAGACCCAGAGGAGGCCTTCA
TGATCACTGTCAAGTTCGTGGAGGACACGTGCCGGCTGGCCCTGGTCTACTGTAGCCTTATAAAGGCCCG
GGCCCGAGAGCTGTCTGCAGTTCAGAAGGACCAGAGCCAGGCAGCTGACATGCTGTGTGTGGTGGTAAAT
AACATGGAGCAACTACGGTTGATCATCGACAAGCTACCCACTCAGCTGGCATGGGAGGCATTGGAGCAGC
GGGTCGGGGCCGTGTTGGAGGAGGGGCAGCTGCAGAACACGTTACATGCTCAGCTGCAGGGCGCCTTGGC
GGGGCTGGGCCATGAGATCCGTACTGGTGTCCGTACCCTGGCAGAGCAGTTGGAGGTGGGCATTGCCACA
CACATCCAGAAACTCATTGGCGTCAAGGAGTCTGTTCTGCCCGAGGATGCCATTCTGCCCCTGATGAAAT
TCTTGGAGGTGAAGCTTTGCTACATGAACACCAACCTGGTCCAGGAGAACTTCAGCAGCCTTCTGACTCT
GTTGTGGACCCACACGCTTACTGTGCTGGTGGAGGTGGCTTCTTCCCAGCGTAGCTCGTCCCTGGCTTCT
GGCAGGCTGAAGGTCGCCCTTCAGAACCTGGAGGTCTGCTTCCACGCTGAGGGCTGTGGTCTGCCACCAG
AGGCCCTGCACACAGACACCTTCCAGGCTCTGCAGAACGACCTGGAGCTGCAGGCGGCCTCCAGCCGGGA
GCTTATCCAGAAGTACTTCTGCAGCCGAATCCAGCAGCAGGCCGAAACCACTTCTGAGAGGCTGGGCGCA
GTCACCGTCAAGGTCTCCTACCGCGCCTCTGAGCAGAGGCTTCGCGTGGAACTGCTCAGTGCTTCTAGCC
TGCTGCCCCTGGACTCCAATGGTTCCAGTGACCCCTTTGTTCAGTTGACACTGGAACCCAGACATGAATT
CCCTGAAGTGGCCCCCCGGGAGACCCAGAAGCACAAGAAGGAACTTCACCCACTCTTTGATGAGACCTTT
GAATTCCTGGTGCCTGCTGAGCCTTGCCAAAAAGCCTGGGCATGCCTCCTGCTCACTGTGCTGGACCACG
ACAGACTGGGAGCAGACGACCTGGAGGGAGAGGCCTTCTTACCGCTCTGCAGGGTACCTGGACTGACGGA
CTGTGCAGAGCCGGGCGAAGCACCTCAAATGCGCCTGCCTCTCACATACCCTGCCCCCAACGGGGACCCA
ATTCTGCGGCTGTTGGAGAGCCGGAAGGGGGATCGCGAGGCCCAGGCCTTTGTAAAGCTGAGGAGGCAGA
GAGCCAAGCAGGCCTCCCAACATGCCCCGTGA

Translation (1083 aa):
MATHLSHPQRRPLLRQAIKIRRRRVRDLQDPPPQATQEVQVQSHHFSPEERDLLYEEALYTVLHRLGQPE
PNHVKEASELLSYLQEAFQVQPEEHQQMLRRVRELEKPVFCLKATVKQAKGILGKDVSGFSDPYCLLGIE
QKVGVAEGSPVSRRRQKAVVKHTIPEEETHRTQVKSQTLNPVWDETFILEFEDIANASFHLDMWDLDTVE
SVRQKLGELTDLHGLRRIFKEARKDKGQDDFLGNVVLRLQDLRCREDQWFPLEPCTETYPDRGQCHLQFQ
FIHKRRATAASRSQPSYTVHFHLLQQLVSHEVTQHQAGSTSWDASLSPQAVTILFLHATQKDLSDFHQSM
AQWLAYSRLYQSLEFPSSCLLHPITSIEYQWIQGRLKAEQREELATSFTSLLAYGLSLIRKFRSVFPLSV
SDSPSRLQSLLRVLVQMCKMKAFGELCPDSAPLSQLVSEALRMGTVEWFHLMQQHHQPMGILEAGKALLN
LVQDVMGDLYQCRRTWNKIFHNVLKIDLFSMAFLELQWLVAKRVQDHTVAAGNLVSPDIGESLFQLYVSL
KELCQLGPVPSDSREVLALDGFHRWFQPAIPSWLQKTYSVALERVQRAVQMDTLVPLGELTKHSTSAVDL
STCFAQISHTARQLDWPDPEEAFMITVKFVEDTCRLALVYCSLIKARARELSAVQKDQSQAADMLCVVVN
NMEQLRLIIDKLPTQLAWEALEQRVGAVLEEGQLQNTLHAQLQGALAGLGHEIRTGVRTLAEQLEVGIAT
HIQKLIGVKESVLPEDAILPLMKFLEVKLCYMNTNLVQENFSSLLTLLWTHTLTVLVEVASSQRSSSLAS
GRLKVALQNLEVCFHAEGCGLPPEALHTDTFQALQNDLELQAASSRELIQKYFCSRIQQQAETTSERLGA
VTVKVSYRASEQRLRVELLSASSLLPLDSNGSSDPFVQLTLEPRHEFPEVAPRETQKHKKELHPLFDETF
EFLVPAEPCQKAWACLLLTVLDHDRLGADDLEGEAFLPLCRVPGLTDCAEPGEAPQMRLPLTYPAPNGDP
ILRLLESRKGDREAQAFVKLRRQRAKQASQHAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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