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Report for CCDS50364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50364.1 Public Mus musculus 19 Majin 23 108 98 CCDS HistoryNCBI Gene:622554Re-query CCDS DB by CCDS ID:50364.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113528.1 ENSMUSP00000109156.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113528.1Link to Ensembl Protein Viewer:ENSMUSP00000109156.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113528Re-query CCDS DB by Protein ID:ENSMUSP00000109156
Original member NCBI NM_001165919.1 NP_001159391.1 Updated not alive Link to Nucleotide Sequence:NM_001165919.1Link to Protein Sequence:NP_001159391.1Re-query CCDS DB by Nucleotide ID:NM_001165919Re-query CCDS DB by Protein ID:NP_001159391
Current member NCBI NM_001165919.2 NP_001159391.1 Accepted alive Link to Nucleotide Sequence:NM_001165919.2Link to Protein Sequence:NP_001159391.1Re-query CCDS DB by Nucleotide ID:NM_001165919Re-query CCDS DB by Protein ID:NP_001159391Link to BLAST:NP_001159391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159391.1 256 Q9D992-1 256 100% 0 0

Chromosomal Locations for CCDS 50364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6195680 6195780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6206218 6206263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6211604 6211679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6212128 6212253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6212997 6213028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6213299 6213396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6215146 6215209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6221673 6221745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6222648 6222756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6223521 6223566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGAGTTTAAAACCATTCACCTACCCATTTCCAGAGACAAGGTTCCTTCATGCAGGACCCAATGTGTATA
AGTTCAAAATCAGATATGGCAACAGTATCAGAGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGA
GCTGGAGGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTC
ATTGTATTTCCCTATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCC
TGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCGG
GAAACCAGCAGATGATATTCCTCTTGAGTTGGTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGG
AAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAGGGCCAAGATGG
AGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGGAGCACGGACGAAGAAGC
CCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGGATGCTGCGTTGGGG
CATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAG
CCAGAGGCTTCTTGGGGTTTCTAAGTGCTCTCTTCCCGTTCCGGTACTTCTTCAAGAAGAGCGGTCAGTG
A

Translation (256 aa):
MSLKPFTYPFPETRFLHAGPNVYKFKIRYGNSIRGEEIEDKEVIVQELEDSIRAVLANMDSLQPFVTEHF
IVFPYKSKWERVSHLKFKHGESILTPYPFVFTLYIEMKWFAEDLPSGKPADDIPLELVLAETEAEEATMR
KWKRKLMEEPSSPSRQGPHRAKMETSSEASSNKKPLKESKRSTDEEAQQEYQDTPASNAIAVKEQDAALG
HGLQGLVVPPLQHSSPPPPKEPGARGFLGFLSALFPFRYFFKKSGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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