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Report for CCDS10824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10824.1 Public Homo sapiens 16 RRAD 24 110 108 CCDS HistoryNCBI Gene:6236Re-query CCDS DB by CCDS ID:10824.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299759.11 ENSP00000299759.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299759.11Link to Ensembl Protein Viewer:ENSP00000299759.6Re-query CCDS DB by Nucleotide ID:ENST00000299759Re-query CCDS DB by Protein ID:ENSP00000299759
Original member Current member EBI ENST00000420652.5 ENSP00000388744.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420652.5Link to Ensembl Protein Viewer:ENSP00000388744.1Re-query CCDS DB by Nucleotide ID:ENST00000420652Re-query CCDS DB by Protein ID:ENSP00000388744
Original member Current member NCBI NM_001128850.2 NP_001122322.1 Accepted alive Link to Nucleotide Sequence:NM_001128850.2Link to Protein Sequence:NP_001122322.1Re-query CCDS DB by Nucleotide ID:NM_001128850Re-query CCDS DB by Protein ID:NP_001122322Link to BLAST:NP_001122322.1
Original member Current member NCBI NM_004165.3 NP_004156.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004165.3Link to Protein Sequence:NP_004156.1Re-query CCDS DB by Nucleotide ID:NM_004165Re-query CCDS DB by Protein ID:NP_004156Link to BLAST:NP_004156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122322.1 308 P55042 308 100% 0 0
NP_004156.1 308 P55042 308 100% 0 0

Chromosomal Locations for CCDS 10824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 66922076 66922353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66923516 66923720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66923846 66923919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66924810 66925179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGGGAGCCGCGGTGGGGGCCAGGAGCGCGAGCGCCGTC
GGGGCAGCACACCCTGGGGCCCCGCCCCGCCGCTGCACCGCCGCAGCATGCCGGTGGACGAGCGCGACCT
GCAGGCGGCGCTGACCCCGGGTGCCCTGACGGCGGCCGCGGCCGGGACGGGGACCCAGGGTCCCAGGCTG
GACTGGCCCGAGGACTCCGAGGACTCGCTCAGCTCAGGGGGCAGCGACTCAGACGAGAGCGTTTACAAGG
TGCTGCTGCTGGGGGCGCCCGGCGTGGGCAAGAGCGCCCTGGCGCGCATCTTCGGCGGTGTGGAGGACGG
GCCTGAAGCAGAGGCAGCAGGGCACACCTATGATCGCTCCATTGTAGTGGACGGAGAAGAGGCATCACTC
ATGGTCTACGACATTTGGGAGCAGGACGGGGGCCGCTGGTTGCCCGGCCACTGCATGGCCATGGGGGATG
CCTATGTCATTGTGTACTCAGTGACGGACAAGGGCAGCTTCGAGAAGGCCTCAGAACTGCGGGTCCAGCT
GCGGCGTGCACGGCAAACAGATGATGTGCCCATCATCCTCGTGGGCAACAAGAGCGACCTGGTGCGCTCT
CGTGAGGTCTCGGTGGATGAGGGCCGGGCCTGCGCGGTGGTCTTTGACTGCAAGTTCATTGAGACATCAG
CGGCATTGCACCACAATGTCCAGGCGCTGTTTGAAGGTGTCGTGCGCCAGATACGCCTGCGCAGGGACAG
CAAAGAAGCCAACGCACGACGGCAAGCAGGCACCCGGAGGCGAGAGAGCCTTGGCAAAAAGGCGAAGCGC
TTCTTGGGCCGCATCGTAGCTCGTAACAGCCGCAAGATGGCCTTTCGCGCCAAATCCAAGTCCTGCCACG
ACCTCTCGGTTCTCTAG

Translation (308 aa):
MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAAAGTGTQGPRL
DWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASL
MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS
REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKR
FLGRIVARNSRKMAFRAKSKSCHDLSVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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