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Report for CCDS161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
161.1 Under review, withdrawal Homo sapiens 1 RSC1A1 24 110 108 CCDS HistoryNCBI Gene:6248Re-query CCDS DB by CCDS ID:161.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345034.2 ENSP00000341963.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345034.2Link to Ensembl Protein Viewer:ENSP00000341963.1Re-query CCDS DB by Nucleotide ID:ENST00000345034Re-query CCDS DB by Protein ID:ENSP00000341963
Original member Current member NCBI NM_006511.3 NP_006502.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006511.3Link to Protein Sequence:NP_006502.1Re-query CCDS DB by Nucleotide ID:NM_006511Re-query CCDS DB by Protein ID:NP_006502Link to BLAST:NP_006502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006502.1 617 Q92681 617 100% 0 0

Chromosomal Locations for CCDS 161.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15659869 15661722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGTCATCATTACCAACTTCAGATGGGTTTAACCATCCCGCCCGTTCTTCAGGACAGAGTCCTGATGTTG
GTAATCCTATGAGTCTTGCTCGCTCTGTCTCTGCTTCAGTCTGCCCTATCAAGCCCAGTGACTCAGATCG
CATTGAACCTAAAGCTGTGAAGGCTTTGAAGGCTTCAGCTGAATTCCAGCTAAACTCTGAAAAGAAAGAA
CATCTTTCTTTACAAGATCTTTCTGATCATGCTTCCTCAGCAGACCATGCTCCAACAGACCAGAGTCCAG
CTATGCCTATGCAGAATTCATCCGAAGAAATAACTGTTGCAGGTAATCTGGAGAAATCTGCTGAAAGAAG
CACCCAGGGCCTCAAATTTCATCTCCATACAAGACAGGAAGCTAGTTTATCTGTCACATCTACTAGGATG
CATGAACCACAGATGTTTCTAGGTGAAAAGGATTGGCATCCAGAAAATCAGAACCTGAGTCAAGTGAGTG
ACCCTCAGCAGCACGAAGAACCAGGGAATGAACAGTATGAGGTTGCACAACAAAAAGCTTCACATGACCA
AGAATATCTTTGTAACATAGGGGACCTTGAGCTTCCTGAAGAAAGGCAACAGAATCAACACAAAATTGTT
GATTTGGAAGCTACGATGAAAGGAAATGGGCTCCCACAGAATGTGGATCCTCCAAGTGCGAAGAAAAGTA
TTCCATCTTCAGAATGCAGTGGCTGCTCAAATTCAGAAACATTTATGGAAATCGATACAGCTCAACAGTC
CCTAGTTACTTTGCTTAATTCAACAGGCAGGCAGAATGCCAATGTCAAGAACATTGGTGCATTGGATCTC
ACTTTAGATAATCCCTTGATGGAAGTAGAAACATCAAAATGTAACCCTTCATCTGAAATTTTGAATGATT
CCATTTCCACTCAGGATTTACAGCCCCCAGAAACTAATGTTGAAATACCTGGAACAAATAAAGAATATGG
CCATTACTCCTCTCCAAGTCTCTGTGGCAGTTGTCAGCCTTCTGTGGAGTCAGCAGAAGAATCTTGCCCG
TCTATAACGGCAGCCTTGAAAGAACTTCATGAACTTTTGGTTGTTAGCAGTAAACCAGCTTCAGAAAATA
CATCTGAAGAAGTAATCTGTCAATCAGAAACCATAGCTGAGGGCCAAACCAGTATTAAAGACCTTTCTGA
AAGATGGACCCAAAATGAGCATCTTACCCAGAATGAACAGTGTCCACAAGTCTCCTTTCATCAGGCCATA
TCTGTATCAGTGGAGACAGAAAAATTAACAGGTACTTCATCTGACACTGGAAGAGAAGCTGTAGAAAATG
TAAACTTCAGGAGTCTAGGTGATGGCCTGTCAACCGATAAGGAAGGTGTCCCCAAATCTAGGGAATCCAT
AAATAAGAACCGTTCTGTCACTGTAACCTCAGCTAAAACATCCAATCAGTTACACTGCACCTTAGGTGTA
GAAATTTCACCCAAACTTTTAGCAGGTGAGGAGGATGCACTCAATCAGACTTCTGAGCAAACTAAGTCTT
TGTCATCCAATTTCATATTGGTTAAAGACTTAGGTCAGGGCATACAGAATTCAGTAACAGACAGGCCTGA
AACCAGAGAAAATGTCTGTCCTGATGCTTCGAGGCCATTACTTGAATATGAACCACCTACCAGCCATCCA
TCATCAAGTCCTGCCATTCTTCCACCATTGATTTTTCCTGCCACAGATATTGACCGCATTCTCCGTGCTG
GCTTTACTTTGCAGGAAGCTCTTGGAGCTTTGCATCGAGTTGGTGGGAATGCAGACCTTGCACTTCTTGT
TTTGCTCGCAAAAAACATCGTAGTTCCTACATGA

Translation (617 aa):
MSSLPTSDGFNHPARSSGQSPDVGNPMSLARSVSASVCPIKPSDSDRIEPKAVKALKASAEFQLNSEKKE
HLSLQDLSDHASSADHAPTDQSPAMPMQNSSEEITVAGNLEKSAERSTQGLKFHLHTRQEASLSVTSTRM
HEPQMFLGEKDWHPENQNLSQVSDPQQHEEPGNEQYEVAQQKASHDQEYLCNIGDLELPEERQQNQHKIV
DLEATMKGNGLPQNVDPPSAKKSIPSSECSGCSNSETFMEIDTAQQSLVTLLNSTGRQNANVKNIGALDL
TLDNPLMEVETSKCNPSSEILNDSISTQDLQPPETNVEIPGTNKEYGHYSSPSLCGSCQPSVESAEESCP
SITAALKELHELLVVSSKPASENTSEEVICQSETIAEGQTSIKDLSERWTQNEHLTQNEQCPQVSFHQAI
SVSVETEKLTGTSSDTGREAVENVNFRSLGDGLSTDKEGVPKSRESINKNRSVTVTSAKTSNQLHCTLGV
EISPKLLAGEEDALNQTSEQTKSLSSNFILVKDLGQGIQNSVTDRPETRENVCPDASRPLLEYEPPTSHP
SSSPAILPPLIFPATDIDRILRAGFTLQEALGALHRVGGNADLALLVLLAKNIVVPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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