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Report for CCDS36093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36093.1 Public Mus musculus 10 Vmn2r84 23 108 98 CCDS HistoryNCBI Gene:625068Re-query CCDS DB by CCDS ID:36093.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36093.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094502.5 ENSMUSP00000092079.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094502.5Link to Ensembl Protein Viewer:ENSMUSP00000092079.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094502Re-query CCDS DB by Protein ID:ENSMUSP00000092079
Original member Current member NCBI NM_001081448.1 NP_001074917.1 Accepted alive Link to Nucleotide Sequence:NM_001081448.1Link to Protein Sequence:NP_001074917.1Re-query CCDS DB by Nucleotide ID:NM_001081448Re-query CCDS DB by Protein ID:NP_001074917Link to BLAST:NP_001074917.1

Chromosomal Locations for CCDS 36093.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 130385800 130386707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130387859 130387982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130389122 130389346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130390675 130391478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130391877 130392159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130394036 130394241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2550 nt):
ATGAAGAAAATGTGTGCTTTAACTATTTCATTTTTGCTTCTGAAGTTTTCTCTCATCTTGTGTTGTTTGA
AAGAACCCATTTGCTTTTGGAGGATAAAAAGTAGTGAATATAATGATGGAAATTTGCAAAGTGAGTGTGG
TTATTTCGTTTGGACAATGAAGAAACTTATGAAAGATGATTTTTATAATGTATGGTTGGATTTTAGAATA
CCAGCAAGTGAATACGAGTTTGTTCTGGTAATGTTTTTTGCTACTAATGAGATCAACAAGAATCCTGATC
TTTTACCAAACACCTCTTTGGTATTCTCTGTCATGGCTGGTAACTGTCAAGATTCATTGGGAAATCTGGA
TATACAATATATGCTAACAAATGACAGCCTGAATTATGTTAATTATGTCTGTGACATAGATGATTCATGT
GCCATAGGCCTTACAGGACCATCATGGAAAACATCCTTAAAACTGGCAATTGATTCTTGGACACCAACGG
TTTTCTTTGGACCATTTAATCCTAAACTGAGTGACCATGACCATTTTCCCTATGTCCATCAGATAGCCAC
CAAGGACACACATTTGTCCCATGGCATGGTCTCCTTGATGCTTCATTTTAGATGGACTTGGATAGGACTG
GTCATCTCAGATGATGACCAGGGTGTTCAGCTTCATTCAGATTTAAGAGAAGAAAGCCAAAGGCACGGTA
TTTGTTTAGCTTTTGTGAATGTGATCCCAGAAACCATGAAGATATACATGACAAGGGGTAATATGTATGA
TAAACAAATTATGACATCTTCAGCAAAGGTTGTTATCATTTATGGTGAAATGAACTCTACACTAGAAATT
AGCTTTAGAAGATGGGCATATTTAGGTGCTCGGAGGATCTGGATCACAACCTCACAATGGGATGTTATCA
CAAATAAAAAAGATTTCAGCCTTGATCTCTTCCATGGTACTGTCACTTTTGCACACCACAAAGGTTGGAT
TGCTAAATTTAAGAATTTTATGCAAACAATGAACACTTCCAAATACCCAATAAACATTTCTCAGTCAGTA
CTGAGGTGGAATTATTTTAATTGTTCAGTCTCTAAGAACAGCATTAAAATGGATCATTTCACATGCGAAA
ACCCATTAGAATTGACAGCACTGCACAACTATGACATGGCCCTGAGTGATGAAGGTTACAATTTGTATAA
TGCTGTTTATGCTGTGGCCCATACCTACCATGAGCACATTCTTCAACAAGTAGAGTCTCAAAAAATGGCA
GAAGACAAAGGAGAATACACAGAATGTCAGCAGTTGGCTCCCTTGCTGAAAACTAGGGTATTTACTAACC
CTGTTGGAGAAATGGTGAACATGAATCATAGGGAATATCAGTGTGCAGAGTATGACATTTTCATCATTTG
GAATTTTCCACAAGGCCTTGGATTAAAAGTGAAAATAGGAAGCTATTTTCCTTGTTTCCCACAGAGTCAA
CAACTTCATATATCTGAAGATTTGGAATGGGCCACAGGAGGAACATCAGTACCCTCCTCCATGTGCAGTG
TGACATGTACTCCTGGATTCAGGAAAATTCATCAGAAAGAAACAGCAGACTGCTGCTTTGATTGTGTTCA
GTGCCCAGAAAATGAGGTTTCCAATGAAACAGATATGGAACAGTGTGTGAGATGTCCAGATGATCAATAT
GCCAACTTAGAGCAAACCCATTGCCTCCAAAGAGCTGTGTCATTTCTGGCTTATGAAGATCCATTGGGGA
TGGCTCTGGGCTGCATGGCACTGTCCTTCACAGCCATCACAATTCTAGTACTAGTCACTTTTGTGAAGTA
CAGGGATACTCCCATTGTGAAGGCCAATAACTGCATTCTCAGCTACATCCTACTCATCTCTCTAGTCTTC
TGCTTTCTCTGCTCATTGCTCTTCATTGGACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCACAT
TTGGACTATTTTTCACTGTGGCTGTTTCTACAGTGTTGGCCAAAACAATAACTGTGGTCATGGCTTTCAA
GCTCACTACTCCAGGAGGAAGGATGAGAGGGATGATGATGATGACAGGGGCACCTAAGTTGGTCATTCCC
ATTTGTACCCTAATCCAACTTGTTCTCTGTGGAATCTGGTTGTTAACATCTCCTCCCTTTATTGACAGAG
ATATACAATCTGAACATGGGAAGACTGTCATTTTTTGCAACACAGGCTCTGTCCTTGCCTTCCATGTTGT
CCTGGGATACTTGGGTTCCTTGGCTCTGGGGAGCTTCACTGTGGCTTTCCTGGCTAGGAACCTTCCTGAC
AGATTCAATGAAGCCAAGTTCCTAACTTTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTCCTCC
CTGTCTACCACAGCACCAGGGGGAAGGTCATGGTGGTTGTGGAGGTCTTTTCCATCTTGGCTTCTAGTGC
AGGGTTGCTAGGGTGTATCTTTGTCCCAAAGTGTTATGCTATTTTAGTTAGACCAGATTCAAATTGTATA
CAGAAGTACAAAGGTAAATTGCTTTACTGA

Translation (849 aa):
MKKMCALTISFLLLKFSLILCCLKEPICFWRIKSSEYNDGNLQSECGYFVWTMKKLMKDDFYNVWLDFRI
PASEYEFVLVMFFATNEINKNPDLLPNTSLVFSVMAGNCQDSLGNLDIQYMLTNDSLNYVNYVCDIDDSC
AIGLTGPSWKTSLKLAIDSWTPTVFFGPFNPKLSDHDHFPYVHQIATKDTHLSHGMVSLMLHFRWTWIGL
VISDDDQGVQLHSDLREESQRHGICLAFVNVIPETMKIYMTRGNMYDKQIMTSSAKVVIIYGEMNSTLEI
SFRRWAYLGARRIWITTSQWDVITNKKDFSLDLFHGTVTFAHHKGWIAKFKNFMQTMNTSKYPINISQSV
LRWNYFNCSVSKNSIKMDHFTCENPLELTALHNYDMALSDEGYNLYNAVYAVAHTYHEHILQQVESQKMA
EDKGEYTECQQLAPLLKTRVFTNPVGEMVNMNHREYQCAEYDIFIIWNFPQGLGLKVKIGSYFPCFPQSQ
QLHISEDLEWATGGTSVPSSMCSVTCTPGFRKIHQKETADCCFDCVQCPENEVSNETDMEQCVRCPDDQY
ANLEQTHCLQRAVSFLAYEDPLGMALGCMALSFTAITILVLVTFVKYRDTPIVKANNCILSYILLISLVF
CFLCSLLFIGHPNQVTCILQQTTFGLFFTVAVSTVLAKTITVVMAFKLTTPGGRMRGMMMMTGAPKLVIP
ICTLIQLVLCGIWLLTSPPFIDRDIQSEHGKTVIFCNTGSVLAFHVVLGYLGSLALGSFTVAFLARNLPD
RFNEAKFLTFSMLVFCSVWITFLPVYHSTRGKVMVVVEVFSILASSAGLLGCIFVPKCYAILVRPDSNCI
QKYKGKLLY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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