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Report for CCDS51998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51998.1 Public Mus musculus 7 Vmn2r35 23 108 98 CCDS HistoryNCBI Gene:625353Re-query CCDS DB by CCDS ID:51998.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169683.1 ENSMUSP00000133007.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169683.1Link to Ensembl Protein Viewer:ENSMUSP00000133007.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169683Re-query CCDS DB by Protein ID:ENSMUSP00000133007
Original member Current member NCBI NM_001105067.1 NP_001098537.1 Accepted alive Link to Nucleotide Sequence:NM_001105067.1Link to Protein Sequence:NP_001098537.1Re-query CCDS DB by Nucleotide ID:NM_001105067Re-query CCDS DB by Protein ID:NP_001098537Link to BLAST:NP_001098537.1

Chromosomal Locations for CCDS 51998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 7786151 7787082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7789232 7789355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7812639 7812866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7814269 7815081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7816781 7817072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7819671 7819867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGTTCACTTTGATGGGGGTCTTCTTCTTCCTTAATATTCCACTTTTCATGGCCAATTTTATTGATCCCA
GGTGCTTTTGGAGAATAAATTTGAATGAAATTCAGGATGAATATTTGGGATTAACTTGTTATTTCATCCT
GGCAGCAGTTCAGAAACCTATTGAGAAAGAATATTTCAACAAAACTCTGAATTTCCTAAAAACAACTAAA
AACCACAAATATGCTTTGGCATTGGTCTTTTCAATGGATGAAATCAACAGGAATCCTGATCTTTTACCAA
ATATGTCTTTGATCATAAGATACACTTTGGGCCGTTGTGATGGGAAAACTGTAATACCTACACCATATTT
ATTTCATAAAAAAACAAAAAGTCCTATCCCTAATTATTTCTGTAATGAAGAGACTATGTGTTCCTTTCTG
CTTACAGGAACCCATTGGGAGGTATCTTTAAGTTTCTGGAAGTACCTGGACAGCTTTTTATCTCCACGTA
TCCTTCAGCTTACCTATGGACCTTTCCATTCTATCTTCAGTGATGATGAACAATATCCCTATCTCTATCA
GATGGCCCCAAAGGACACATCTCTAGCATTGGCAATCGTCTCCTTCATACATTACTTCAACTGGAATTGG
ATTGGCCTTGTCATCCCAGATGATGATCAAGGAAACCAATTTTTTTTAGAGTTGAAAAAACAGTGTGAAA
ACAAGGAAATTTGCTTTGCCTTTGTGAAAATGATCTCTGTTGATGACATTTCATTAGAAGAAAAAACTGA
AATGTACTACAAACAAATTGTGATGTCATCCTCAAATGTTATCATCATTTATGAGGAAACAATCAATTTC
ATTGATTTGATCTTCAGAATGTGGGAACCTCCAGTTTTACAGAGAATATGGATCACCACAAAACAATGGA
ATTTCCCTACCAGTAAGAGAGACATAACGCATGACACATTCTATGGATCACTTACTTTTCTACCCCACCA
TGGTGGGATTTCTGGCTTTAAAAATTTTGTGCAGACTTGGTTCCATCTCAGAAGCAAAGATTTATATCTA
GTAATGCCAGAGTGGAAATACTTTAAATATGAATCCTCAGCATCTAAGTGTAAAATACTGAAGAGCAAAT
CATCCAATGCCTCATTTGATTGGCTAATGGAACAGAAGTTTGACATGGCCTTTAGTGAGAGTAGTCATAA
CATATACAATGCTGTGTATGCCGTAGCCCATGCACTCCATGAGATGAATTTGCAGCAGGTTGATAACCAG
GCAATAGACAATGGGAAAGGAGCCAGTTCTCACTGCTTGAAGGTAAACTCCTTTCTAAGAAAGATCCACT
TTACTAATCCTCTTGGGGACAAAGTGATTATGAAACAAAGAGTAATAATGCAGGAAGAATATGACATTTT
TCATTTTGAGAATCTCTCACAGCACCTTGGGATTAAGGTGAAGTTAGGAAAGTTCAGCCAATATGTTTCA
CATGGTCGAAACTTTCACTTATATGTAGACATGCTTGAGGTGGCCACAGGAAGTAAAAAGATGCCATCCT
CTGTGTGCAGTGCAGAATGTAGTCCTGGATTCAGAAGAATGTGGAAGGAGGGAATGGCAGCCTGCTGTTC
TGTTTGCAGCCCCTGCCCTGAAAATGAAATTTCTAATGAGACAAATATGGATCATTGTGTGAATTGTCCA
GAATACCAATATGCCAGCACAGAACAGAACAAATGTATTCAAAAAGTTGTCACCTTTCTAAGCTATGAAG
ACCCCTTGGGGATGGCACTTGCCTTAATTGCCTTCTGTTTCTCTGCATTCACAGCTGTGGTACTTTGTGT
CTTTGTGAAGCACCATGACACTCCTATTGTGAAGGCCAATAACAGAATCCTCAGCTACATATTATTGCTA
TCACTCATGTCCTGTTTTCTGTGTTCCTTTTTCTTCATTGGCCATCCTAACAGAGCCACCTGTGTCTTAC
AACAAATCACATTTGGAATTGTATTCACTGTGGCTCTTTCCACAGTTCTGGCTAAAACAGTCACTGTGGT
TCTCGCCTTCAAAATCACAGACCCAGGGAGAAGATTGAGACACTTCCTTGTATCAGGGACACCCAACTAC
ATTATTCCCATATGTTCCCTACTCCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTG
TTGATATTGATGAACACTCTCAGAATGGCCATATCATCATTGTGTGCAACAAGGGCTCAGTTACTGCATT
CTACTGTCTTCTTGGATACTTGGCCTGCCTGGCACTTGGAAGTTTCACTGTGGCTTTCTTGGCCAAGAAT
CTGCCTGACACATTCAATGAAGCCAAGTTCTTGACCTTCAGCATGTTAGTGTTCTTCAGTGTCTGGGTCA
CCTTCCTCCCTGTCTACCATAGCACCAAGGGCAAGGTCATGGTTGCTGTGGAGATCTTCTCCATCTTGGC
ATCCATTGCAGGGATGCTTGGATGTATTTTTGCACCCAAGATTTATATCATTTTAATGAGTCCAGAGAGA
AATTCTACCCAAAAGATCAAAGAGAATAATTCTACCCAAAAGATCAAAGAAAAATCATATTTCTGA

Translation (861 aa):
MFTLMGVFFFLNIPLFMANFIDPRCFWRINLNEIQDEYLGLTCYFILAAVQKPIEKEYFNKTLNFLKTTK
NHKYALALVFSMDEINRNPDLLPNMSLIIRYTLGRCDGKTVIPTPYLFHKKTKSPIPNYFCNEETMCSFL
LTGTHWEVSLSFWKYLDSFLSPRILQLTYGPFHSIFSDDEQYPYLYQMAPKDTSLALAIVSFIHYFNWNW
IGLVIPDDDQGNQFFLELKKQCENKEICFAFVKMISVDDISLEEKTEMYYKQIVMSSSNVIIIYEETINF
IDLIFRMWEPPVLQRIWITTKQWNFPTSKRDITHDTFYGSLTFLPHHGGISGFKNFVQTWFHLRSKDLYL
VMPEWKYFKYESSASKCKILKSKSSNASFDWLMEQKFDMAFSESSHNIYNAVYAVAHALHEMNLQQVDNQ
AIDNGKGASSHCLKVNSFLRKIHFTNPLGDKVIMKQRVIMQEEYDIFHFENLSQHLGIKVKLGKFSQYVS
HGRNFHLYVDMLEVATGSKKMPSSVCSAECSPGFRRMWKEGMAACCSVCSPCPENEISNETNMDHCVNCP
EYQYASTEQNKCIQKVVTFLSYEDPLGMALALIAFCFSAFTAVVLCVFVKHHDTPIVKANNRILSYILLL
SLMSCFLCSFFFIGHPNRATCVLQQITFGIVFTVALSTVLAKTVTVVLAFKITDPGRRLRHFLVSGTPNY
IIPICSLLQCVLCAIWLAVSPPFVDIDEHSQNGHIIIVCNKGSVTAFYCLLGYLACLALGSFTVAFLAKN
LPDTFNEAKFLTFSMLVFFSVWVTFLPVYHSTKGKVMVAVEIFSILASIAGMLGCIFAPKIYIILMSPER
NSTQKIKENNSTQKIKEKSYF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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