NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51989.1 Public Mus musculus 7 Eddm13 23 108 98 CCDS HistoryNCBI Gene:627821Re-query CCDS DB by CCDS ID:51989.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121024.7 ENSMUSP00000113155.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121024.7Link to Ensembl Protein Viewer:ENSMUSP00000113155.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121024Re-query CCDS DB by Protein ID:ENSMUSP00000113155
Original member Current member NCBI NM_001177416.1 NP_001170887.1 Accepted alive Link to Nucleotide Sequence:NM_001177416.1Link to Protein Sequence:NP_001170887.1Re-query CCDS DB by Nucleotide ID:NM_001177416Re-query CCDS DB by Protein ID:NP_001170887Link to BLAST:NP_001170887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170887.1 164 E9Q7F5 164 100% 0 0

Chromosomal Locations for CCDS 51989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6252808 6252892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6255924 6255941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6258625 6258630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6259338 6259346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6260536 6260544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6263907 6263933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6266289 6266345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6266830 6266847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6268802 6268807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6269883 6269891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6271397 6271405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6272976 6273002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6274347 6274373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6277420 6277541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6279414 6279451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6281468 6281495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGTGCAGACTAGAGCCATTTCTGAAGAGGTCCCTGGTGGTCCTCCTTTTCCTGGGCCTGGCAGAGGCCT
GCGTTCCTCGTGAAGTCGCAATGGAAGAGAAAATCAAAATGCTGAAAGGAATCTTGGGGTTGATGGGCAG
ACTGTCCCCAGATGGTTTCAGACAAAACATCATATCCTCCTCCAAGACGCCTCCCCTGGTAACCACTCCA
GACAAGTCAGAAGAAGAAATGAAAATATTGAAACGGATCCTTGGTCTGCTGAGCCTCCAAGTACTGAATG
AAGAAACAAGTAACTGCAAAGAAGAAGTGAAGCCTCCTCCAGCCACCACCACAGTCAGGGGACTTGTGAG
GACCAGTGGATGGAACTTTCTGAGGTGTGCCTACATGGTGATTACGTTCTTCTTCGTGTCCTACAATAAA
GGAGACTGGTGTTACTGCCGCTACTGTAACCCGGACCTGGATCTGAGAGACGACCCCTGCTGTTCCTTCC
AGTGA

Translation (164 aa):
MCRLEPFLKRSLVVLLFLGLAEACVPREVAMEEKIKMLKGILGLMGRLSPDGFRQNIISSSKTPPLVTTP
DKSEEEMKILKRILGLLSLQVLNEETSNCKEEVKPPPATTTVRGLVRTSGWNFLRCAYMVITFFFVSYNK
GDWCYCRYCNPDLDLRDDPCCSFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH