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Report for CCDS36214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36214.1 Public Mus musculus 11 Fbxo39 23 108 98 CCDS HistoryNCBI Gene:628100Re-query CCDS DB by CCDS ID:36214.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108504.1 ENSMUSP00000104144.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108504.1Link to Ensembl Protein Viewer:ENSMUSP00000104144.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108504Re-query CCDS DB by Protein ID:ENSMUSP00000104144
Original member Current member NCBI NM_001099688.2 NP_001093158.1 Accepted alive Link to Nucleotide Sequence:NM_001099688.2Link to Protein Sequence:NP_001093158.1Re-query CCDS DB by Nucleotide ID:NM_001099688Re-query CCDS DB by Protein ID:NP_001093158Link to BLAST:NP_001093158.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093158.1 443 Q5NBU5 443 100% 0 0

Chromosomal Locations for CCDS 36214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72316824 72317849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72318342 72318518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72319083 72319211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGATGAAGACTGTGAAGTGACCCAGCTCCAAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGTGCC
TGCGACGTGTTTTCTGGTGGCTGGGAGACAGGGACAGGTCCAGAGCTGCCCTGGTCTGCAGAAAGTGGAA
CCAGATTATGTACTCAGCTGACCTCTGGCGATACAGGACCATCACGTTCAGCGGAAGGCCGTCCAGGGTA
CACGCATCTGAATTCGAGTCGGCACTGTGGTACATTAAGAAATTTGGCCGATACCTGGAACACTTGGAAA
TCAAGTTCCTGAACCCTTACAATGCCGTCTTGACCAAAAAGTTCCAGGTCACCATGCGAGGCCTCCTGTC
ATGCCTGGGCAAGAGTAACAACCGCCTGCGGTCACTCTCTATCCAACACCTGGAGCTGGATCGGCTGGTC
TGGAGAAATAGCATTAGGGGTTCACTCATCAAGAGCCTGAGTTTTTTCTTAAAGAAAATGGGCAAACACC
TGGACCATCTCAGCCTGAAAGGAGCCCGGCTGACAGTGGAGCAAGGCTGCCACATCCTCAACTCCCTGAG
CTACATGCAGAATGAGAACATGGCTTCAGAGCTCAACATTGAAGACTTCTTCAGCCATCACCTGGCTGTC
TATGGCAGCTCCCAGTTCAACAAGGCCATGGCCACCTTCCGCAACTTGACATTCCTAACCCTCAACTACA
ACTGTATCTCCGACGAGCTGCTCGAGACCTTGAGCGAGAACAACGCCGGGACCCTCCGGACCATGAACAT
CAAATGCCACGTTCATGACCCTCACGGTCAGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAG
GCCAGCAACCTGAAGGTGAACTTCTTCTTTGAGCGGGTGATGAAATATGAACGCCTGGCCCGGATCTTGC
TGCAGGAGATTCCAGTCAGGAGCATCAGCCTGAGGAGTTGCTATTTCAGTGACCCGGACTGGTCCATGCG
GCCCACTCTGACAGACCTCCTGCCCACCTTCCGGAACACCCTGCAGAAGTTAACGTTCGAGTTCAACAAT
AATCACGAGTCTCTAGATGAGCAGCTGCATCTCCTCATCTTGGCCTGTCGGAAGCTGTTTTACTTCAAAA
TCTGGGCTTTCCTGGACGTTAAGTTTGTGGAGCGGATCCTGAAGAGCCAGGAGGAAGGGCAGTGCTCCCT
GCATACACTGAAGGTGAGAATTTATACAAACCGATATGAGACAAATGAAGAGGACAGGACCCTACGGGAA
ATTTACAGGAAATACAGAAAGCTGATCGATTCAGAACTTAACTATTTTGTCGTCGCCTACCCCATGATGT
AA

Translation (443 aa):
MDEDCEVTQLQEQSCWATLPDVCLRRVFWWLGDRDRSRAALVCRKWNQIMYSADLWRYRTITFSGRPSRV
HASEFESALWYIKKFGRYLEHLEIKFLNPYNAVLTKKFQVTMRGLLSCLGKSNNRLRSLSIQHLELDRLV
WRNSIRGSLIKSLSFFLKKMGKHLDHLSLKGARLTVEQGCHILNSLSYMQNENMASELNIEDFFSHHLAV
YGSSQFNKAMATFRNLTFLTLNYNCISDELLETLSENNAGTLRTMNIKCHVHDPHGQVVWGMSWAKLARQ
ASNLKVNFFFERVMKYERLARILLQEIPVRSISLRSCYFSDPDWSMRPTLTDLLPTFRNTLQKLTFEFNN
NHESLDEQLHLLILACRKLFYFKIWAFLDVKFVERILKSQEEGQCSLHTLKVRIYTNRYETNEEDRTLRE
IYRKYRKLIDSELNYFVVAYPMM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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